G88532


Basic Information

Item Value
gene id G88532
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 5293618 ~ 5296539 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU119133
GAAAACGTTAATTAGGTTGAGAGGTGTTTAAAATGGGAAGAGGAAAGATttgagaggaagagggagaagtGCGTGTGTTGAGTGCTGGAATCCTGCTTGAAAAAAAAGACCTTTAAAGTCAGACAAGCCTGTTGCCTGACTGCAATTAATCCATCAATGTCTCATGGCTGTAGTTATGTTCAGTAGTCACAACATAGGGGAGCACATGGGCTAAAGGCCTGGGGTAGAGTTAAACCATGTAGAAAACTACAGTACATTGGAACAGATGTATAGAGCTGCCTAGAACACAAGCAATtgactgagagagcacagtatATTGTCAGTATATGGGCCATGGAAGTTAACTGTGTGGCTTTTCTGTAAAATGGAGATGTAAAgcacaaatgttttaaaaaataaacagtttttaatttagacataaaTTCCTCAAGTGAGTTCATTAAGCCACACCTGgaattcctttttttccttttgctgGAGGTTTAAAACCCCTTCAGCTGCCCTAAATGTCCTGACTACTCACTGAACCCATAAAACACCTATCTTCCCTGGAGAATGTGATAGCTGTTCCTTGTGATGGTATTGTCCAAGCTTCTACTCAAATAGTAATAGATCACTGAAATTCTGCCACACCTGGAACCACTCAGAACCAACTGGAGTCCCTTAAACCATCTACGGAACCTCATTCGACTTTATTCTCAGTTGTAAAATTAACTGGAGCACAACTGCAGCAATGAATAATCCACCATGACCCACGCTGTGCTATAAACTAATGAACTGCATGTCCTTGTGGTTCGGGAAGGTAAATGGTGCCATATGGTGCAGGTCCGCGCATTACGGATAGCAGGTCGGCTGCCGTTTGTGTAAAAGGTGTAGTGACGGATACTGCCGCCAATTGGCTGTATGACTCAGCAGAACTGCCATGATGCCTGAGATGATTCAGAATATCTGCATCATCGCCGACGGCATCACAGTAATGGTACATATAAAAGCCCCATGACTGATTGAGCTTGGCTATTGGAAGATAATTAGGACAGGTGTAAAGAAGCAGGAGAATGGAGAGGAGGTCTGGTCTGCTAATGATCCAGGACAGGCAGGTAGGCATGGAGTCCTGAATGACCCCAGGGCCTCCCTCGTTCTTCCTGGGATACCAGAACACGACTTCCTCCTGGCCACTGTGGAGCTATTTTTAGCCTAATCACCCTTTTACCACTCCCCAACCAGCTGAATAAATTACATGTACACGTACAGGCCTTTGCAAGGCATCGCCTTGGTTAATGGCCTTTACAACACTGCCGGAGCCACACTAACGAGGAGCCAGCCACAACCCTCACATTAACTGCCGGCGGATTATTCATGGAGTTTGTGATACCTCCTCTTAACATTTAATGATAATTGCTCCTGGCCACTAAGTGCCCTTCCTGGTCATCTTTGTGGACTGATTAATTGAAGAGATATAGGTTGTATGCCTTGTCAACTTATTCGCTCATTTTCATTGCATGTATGACAGAGTTCTCGTACTGTGATCTTTTAGGATGCTCAAGCCTGTCCTGGCTTCTGTCCGGTTATGAGcttagagaaagagagcaagcaaacaagaaaagaaatgaatgtttttggtttatttatatttatttatttttttttcccttccctTGTGAGTCACGCTGAGCTCAGTATTAGATGTGTGATAGGAATTGTGGAGTAGCTTGCCCTATTGAGAGATGCTTttcaaaaaaatgaagagaggaCGACAAGGCAAGGGAACAATTACTAGTATATCTTCTCTGGCACTTCTCGCTCCGATGAGACACAATGCCAGCACTTGTAATGCAGAATGCCGCATAGGCTCAGCCGCATGATAATGCCGAGATTCTGAGTGAAGCAGATGTCATTCGTAATTCCTTGAACTGCAACGGCTGCCCTTGCTTTATCCGCTGTACCCCATTGCGTTTGGCATGCAAGCACGCTTCTGTGATCCATGCTTTCAAATTCAAAGCTTTGGGAGCTTCCTATTTACCTGCTATTTCAAGTATGTTGATTATGCTTGCTCTTCTGATGGCATATGCAGATCAGTGTTTTTTGGATCAGATACAGGatttctgaatttaaaaaaaatggctgcCTTTCAGTGTCCTTCAGAACTAGGAAGACCCTTCAGGGAAATAGAGAACATCTACACTTAAATCTAGATGCAGATGAGTTTCATTGTCAAATAAATTGCTTCATATCTTAGCTGTAATCAGCTACATACTCTGCCTGCTGGAAATAAAGTGCCTCTGGAAGTGCATCTTTAAGTTTGTGTCCTCTTGGACTATGTTGACCATGCTGGTTGTGGAAGGTGTTCTGGTACATTGTTCCAGTGATTACTATAACtatcaacattaacatatgAACATATGCATTTGGTGAGCTTGGATTTTCCCCTGTGTAAAAGCAACCCATATAATGGGAGAACTTATGTACCAAAGCAAACAAAGTATATGCATTTCAGTTTCtcatcattgtcctgttgagtAAAGAGATCTAATATTCAAAATGACCTTATTCCTATTACCTAcaaatttttatttactttggcCTACACATTTTTTTGATTTACAGACAGAATGCAATTACATGTCTCCCTTGAACTTTGTCTCCATACCTGCTCACTCACCAGAGTCACCTGACCTGACTCACCAGACCTAAGTTCAGTTTGAGATGGTCTAGTTTAACCTCAAGAAGTACTGTAATGTAAGAAATACAAAATTTCAATTCACGTTATTTTGGAATACTAGCCTGATTAGTGTGAAGGTCTGTTTCTCTTGTGCTTCTCTTGTATTGGTCCCTCTCTTGATATGAGAGATTTGTTTAAGCCAGGCTTGCTTAAAATAGCTTGGACCTGCATTGCTGCTTCATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119133 True 2902 lncRNA 0.42 2 5293618 5296539

Neighbor

gene id symbol gene type direction distance location
cul2 cul2 coding upstream 384586 4889274 ~ 4909032 (+)
wwp1 wwp1 coding upstream 416781 4827444 ~ 4876837 (+)
LOC103038427 snx16,LOC103038427,LOC108431374 coding upstream 516542 4755858 ~ 4777076 (+)
rreb1 rreb1b coding upstream 1138223 4076926 ~ 4155395 (+)
ly86 NA coding upstream 1235045 4051732 ~ 4058573 (+)
nrp1 nrp1,LOC107565689,LOC106578544 coding downstream 431979 5728518 ~ 5821874 (+)
itgb1 itgb1,itgb1a,LOC107566918,LOC107565694,LOC107653806 coding downstream 535294 5831833 ~ 5874724 (+)
LOC103042448 NA coding downstream 579165 5875704 ~ 5926455 (+)
LOC103043891 LOC103043891,LOC108431261,LOC107655697,LOC107653805,LOC107566917,LOC107714010,LOC108271824 coding downstream 633285 5929824 ~ 5988498 (+)
LOC103044377 napg,LOC108271818,LOC108431250,LOC105890170,LOC107734322,LOC106590336 coding downstream 695587 5992126 ~ 6001148 (+)
LOC111193318 NA non-coding upstream 252608 5039855 ~ 5041010 (+)
G88475 NA non-coding upstream 384578 4876300 ~ 4909040 (+)
G88459 NA non-coding upstream 719990 4573211 ~ 4573628 (+)
G88454 NA non-coding upstream 765294 4528099 ~ 4528324 (+)
G88344 NA non-coding upstream 839750 4452634 ~ 4453868 (+)
G88538 NA non-coding downstream 340481 5637020 ~ 5637262 (+)
G88541 NA non-coding downstream 549072 5845611 ~ 5902704 (+)
LOC111193319 piezo2,LOC108431241,LOC108271803,LOC107734312 non-coding downstream 710556 6007095 ~ 6015307 (+)
G88637 NA non-coding downstream 817976 6114515 ~ 6148334 (+)
G88640 NA non-coding downstream 873857 6170396 ~ 6206486 (+)
G88486 NA other upstream 486945 4796822 ~ 4806673 (+)
G88473 NA other upstream 612781 4680113 ~ 4680837 (+)
trnap-agg_3 NA other downstream 1946367 7242906 ~ 7242977 (+)
G88849 NA other downstream 2282071 7578610 ~ 7579960 (+)
LOC111193322 NA other downstream 2780558 8077097 ~ 8080028 (+)
sumo1 NA other downstream 2945780 8242319 ~ 8249434 (+)
G89453 NA other downstream 4306232 9602771 ~ 9610254 (+)

Expression


Co-expression Network