RNA id: XM_022673412.1


Basic Information

Item Value
RNA id XM_022673412.1
length 3324
RNA type mRNA
GC content 0.47
exon number 21
gene id cul2
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 4889274 ~ 4909032 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCGAGCCGGGGCCGGGTGTCGGGGCTGCGGGAGGAGGAGCTGCGGGCTGGAGCTCCTCTCTGGATCGGAGGCTCGCTCGGGTTTAGCCGACTAGCTGCTGTTTCGGTTCGGTTAGAGTTCGGATTTCAGCGCTCTGACTAAAAGGACGGTCCAGTAACTTTACTTGGGGAGTAGCTTCCTTGTTTTGGGCCTGTCTCAGTCTTTACCTCCACTaaactccagctccagctccctAAACAAAACCGAAATCACTGAAATGTCAGACTAGCTGAAGCGGCTATCCGGCTAACTAGCTAGGCCTCCGTACTGTTAGGCTCGTGATTGTGTTTTTATAAGTAAACGGGTTTAAATACCAACGGGTAAATCCGGGTAATTACCCAACTGTCGGCTTATAAAGCTTCACAGAAAACTCATATAATCAGCGTTAACTAACTGTATAACGAGCCTTCCTTAATATAGCCACAAATGGAGTTCATCAAtctgctggctggctggctactTACTTAGCCCTAGCTGTAAGACATGGTGGTGGTCTGAAGTTTGCTCTGTAGTtctactgtaaaactCAGTCTGCAGCGGAAGCCGCACACAATGTCCTTAAAACCGCGGGTGGTGGATTTTGATGAGACATGGAACAAGCTGCTGACGACCATCAGGGCTGTGGTGATGCTCGACTACGTGGAGAGAGCCACTTGGAATGATCGGTTTTCTGATATTTATGCATTGTGTGTGGCGTACCCAGAACCTTTGGGCGAGCGGCTTTACACAGAGACAAAAGTATTTCTGGAAAATCATGTCCGTCAGCTCTATAAGAAAGTGCTGGAGTCTGAGGAGAAAGTCCTGCTGATGTATCATAGATACTGGGAGGAGTACAGTAAGGGTGCTGACTACATGGATTGCTTGTACAGGTACCTCAACACACAGttcataaagaaaaacaaactgacGGAAGCAGACTTGCAGTATGGGTACGGTGGGGTTGATATGAATGAACCGCTGATGGAAATTGGAGAGCTTGCACTTGACATGTGGAGGAAGCTGATGATCGAGCCACTACAGGCCACGCTGATCCGAATGCTTTTGAAAGAAATCAAAAATGACCGGTGTGGGGAGGATCCGAATCAGAAAGTAATCCATGGGGTTATCAACTCCTTTGTTCATGTTGAACAGTACAAGAAAAAGTTTCCTCTAAAGTTTTATCAGGAGATCTTTGAAGGGCCATTTCTGACAAAAACGGGCGAGTATTACAAACAAGAAGCCTCCAACCTACTGCAAGAATCCAACTGTTCTCAGTATATGGAGAAGGTTTTAGGGCGGTTGAAAGATGAAGAGGTGCGATGTCGGAAGTACCTGCACCCGAGCTCCTACGCCAAAGTCATTCACGAATGCCAGCAGAGGATGGTGGCCGACCATCTGCAGTTTCTGCATGGGGAGTGCCAGAACATCGTCAGACAAGAGAAGAGAGACGACATGGCGAACATGTACACGCTGCTGCGGGCTGTCTCCAACGGCTTACCTCACATGATACAAGAGCTGCAGGTGCACATTCATGATGAGGGTCTCCGAGCCACCAGTAACCTCTCTCAGGAAAATATGCCAACCCAGTTTGTGGAGTCTGTGTTGGAGGTTCATAGTAAATTTGTCCAGTTGATTAACACAGTGTTGAATGGGGACCAGCATTTTATGAGCGCACTTGACAAGGCATTGACTTCAGTAGTAAACTACAGAGAGCCTAAATCCATCTGTAAAGCGCCTGAACTGCTTGCCAAGTACTGTGACAATCTGCTAAAGAAGTCAGCGAAGGGGATGACTGAGAACGAGGTGGAGGATAAGCTGACCAGCTTCATCACTGTTTTCAAGTACATTGATGACAAAGATGTCTTTCAAAAGTTTTATGCAAGAATGCTTGCTAAGAGATTAATACACGGCCTCTCCTTATCCATGGACTCAGAGGAGGCCATGATCAACAAACTTAAGCAAGCGTGTGGCTATGAGTTCACAAGCAAACTGCACAGAATGTACACAGACATGAGCGTTAGTGCCGACCTCAACAACAAGTTCAACAACTTCATCAAAACCCAGGAGATAGTGGTGGACCTGGGTATCAGCTTTCAGATCTACGTGTTACAGGCAGGTGCATGGCCTCTTACACAGGTCCCCTCCTCTACGTTCGCCATCCCTCAGGAACTGGAGAAGAGTGTACAGATGTTTGAGTTGTTTTATAATCAGCATTTCAGCGGGAGGAAGCTGACCTGGTTACACTATCTTTGCACAGgtgagGTGAAGATGAACTACCTGTCCAAACCCTATGTGGCCATGGTTACTACCTATCAAATGGCGGTGCTGCTGGCCTTCAACAACAGCGAGACTGTGGGGTATAAAGAGCTGCAGGACAGCACACAGATGAGTGAGAAGGAGCTGCAGAAGACCATCAAGTCCCTGCTGGATGTCAAGATGATCAATCATGACTCACAGAAAGAGGAAATTGAGGCCGAATCTACTTTTTCACTAAATATGAGTTTCACTAGTAAAAGAACCAAGTTTAAGATCACTACGTCAATGCAGCGGGACACACCACAGGAGATGGAACAGACGAGGAGTGCTGTGGACGAAGAcaggaaaatgtatttacaGGCTGCTATAGTGAGGATTATGAAAGCCAGGAAGATCCTGAGACACAATGCCCTCATACAAGAAGTGATCAACCAGTCTAAAGCCAGATTCAACCCCAGTATCAGCATGATCAAGAAGTGCATCGAAGTGCTTATCGACAAGCAGTACATTGAGCGGAGCCAGACATCTGCGGACGAGTACAGCTACGTCGCATAAAAGAATCGTCACTTGGCGGACAGATCGCAaatcatgttctttttttttcggcTGTGGCTGGCTCAGGCTCTCTCCCGAAGGGAAGAAGCGGGACTGTGCCTCCATCTTAtgtggggggagggggaggggcctCCAAGTAACCAGGCAGCCATCAACACCCCCCACCTCCCCTCCAACCCACCCTTTCTGATTTTATGCTGTTTACATCACCAGTGCCACGCCCTAGAGCGTCaacgaaaacaaaaaaaagaaaaatgcctATAGCTATTCAAGTGAGAGCtgataatacatttttagaCGATGTAATCGTAACCAGAGAAACCAAGAGAGCGAGCGGATGTGCCGAGCTGTGTcagagttttaaaaaagaaaaaagtgtcaGAGAAAAACAACCATGCTTTCTTTTCTCACGTTTGCAGTTGtcgtgtgtttttctttttttaaatgtatcaaagtaagaggaaaaaaaatattgtaataaaaccGTTATACTGA

Function

GO: NA

KEGG:

id description
K03870 CUL2; cullin 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119035 lncRNA upstream 316107 4573211 ~ 4573628 (+) True G88459
TU119030 lncRNA upstream 361411 4528099 ~ 4528324 (+) True G88454
TU118885 lncRNA upstream 435867 4452634 ~ 4453868 (+) True G88344
TU118860 lncRNA upstream 690591 4197327 ~ 4199144 (+) True G88327
TU118866 lncRNA upstream 726078 4161602 ~ 4163657 (+) False LOC111193316
XR_002650425.1 lncRNA downstream 130881 5039855 ~ 5041010 (+) True LOC111193318
TU119133 lncRNA downstream 384644 5293618 ~ 5296539 (+) True G88532
TU119139 lncRNA downstream 728046 5637020 ~ 5637262 (+) True G88538
TU119146 lncRNA downstream 936637 5845611 ~ 5902704 (+) True G88541
TU119247 lncRNA downstream 1098121 6007095 ~ 6015307 (+) True LOC111193319
XM_022673411.1 mRNA upstream 12898 4827444 ~ 4876837 (+) True wwp1
XM_007238642.3 mRNA upstream 112659 4755859 ~ 4777076 (+) True LOC103038427
XM_007238646.3 mRNA upstream 116053 4755859 ~ 4773682 (+) False LOC103038427
XM_022673410.1 mRNA upstream 116091 4755859 ~ 4773644 (+) False LOC103038427
XM_007238645.3 mRNA upstream 118046 4755858 ~ 4771689 (+) False LOC103038427
XM_007238651.2 mRNA downstream 2704 4911678 ~ 5463025 (+) True pard3
XM_007238652.2 mRNA downstream 2704 4911678 ~ 5463025 (+) False pard3
XM_015602813.2 mRNA downstream 2704 4911678 ~ 5463025 (+) False pard3
XM_015602814.2 mRNA downstream 2704 4911678 ~ 5463025 (+) False pard3
XM_007238653.3 mRNA downstream 819544 5728518 ~ 5821874 (+) True nrp1
TU119068 other upstream 83062 4796822 ~ 4806673 (+) True G88486
TU119049 other upstream 208898 4680113 ~ 4680837 (+) True G88473
TU119113 other downstream 2682 4911656 ~ 5123726 (+) False pard3
trnap-agg_3 other downstream 2333932 7242906 ~ 7242977 (+) True trnap-agg_3
TU119517 other downstream 2669636 7578610 ~ 7579960 (+) True G88849
TU119784 other downstream 3337240 8246214 ~ 8249434 (+) False sumo1
TU120304 other downstream 4693797 9602771 ~ 9610254 (+) True G89453

Expression Profile