RNA id: TU119268


Basic Information

Item Value
RNA id TU119268
length 241
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G88637
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 6114515 ~ 6148334 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTGCCTGTCAGATACACTAGTGGACATTTTCAACAAAGACAATGCAAACAAAGTACTGACCTTTTTAACTGTTACCAACCTACAAGTCCTCATCTAAGGACGAGATCATAGAACCTTGTGAATAAACAATACCTATCCTGCCACGAAATAGCtgacgagctgatgtggcgttaaactcaaccaaccaaccaaccaaccaacattccattacattacatttggcagacgcttttgtccaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119247 lncRNA upstream 99208 6007095 ~ 6015307 (+) True LOC111193319
TU119249 lncRNA upstream 99208 6010991 ~ 6015307 (+) False LOC111193319
XR_002650426.1 lncRNA upstream 100250 6008073 ~ 6014265 (+) False LOC111193319
XR_002650427.1 lncRNA upstream 100250 6008091 ~ 6014265 (+) False LOC111193319
TU119146 lncRNA upstream 211811 5845611 ~ 5902704 (+) True G88541
TU119273 lncRNA downstream 22062 6170396 ~ 6206486 (+) True G88640
TU119275 lncRNA downstream 45379 6193713 ~ 6214437 (+) True G88641
TU119276 lncRNA downstream 71741 6220075 ~ 6225578 (+) True G88642
TU119293 lncRNA downstream 101522 6249856 ~ 6275297 (+) True G88659
TU119316 lncRNA downstream 267238 6415572 ~ 6415888 (+) True G88682
XM_007238663.3 mRNA upstream 113367 5992126 ~ 6001148 (+) True LOC103044377
XM_007238662.3 mRNA upstream 126017 5929824 ~ 5988498 (+) True LOC103043891
XM_022673422.1 mRNA upstream 188060 5913261 ~ 5926455 (+) False LOC103042448
XM_022673437.1 mRNA downstream 1120395 7268729 ~ 7326748 (+) False vopp1
XM_007233390.3 mRNA downstream 1120396 7268730 ~ 7326748 (+) True vopp1
XM_022673443.1 mRNA downstream 1580205 7728539 ~ 7735786 (+) True LOC111193320
XM_022673348.1 mRNA downstream 1615543 7763877 ~ 7785181 (+) True vps16
XM_007248886.3 mRNA downstream 1637988 7786322 ~ 7796482 (+) True rgn
TU119113 other upstream 990789 4911656 ~ 5123726 (+) False pard3
TU119068 other upstream 1307842 4796822 ~ 4806673 (+) True G88486
TU119049 other upstream 1433678 4680113 ~ 4680837 (+) True G88473
trnap-agg_3 other downstream 1094572 7242906 ~ 7242977 (+) True trnap-agg_3
TU119517 other downstream 1430276 7578610 ~ 7579960 (+) True G88849
TU119784 other downstream 2097880 8246214 ~ 8249434 (+) False sumo1
TU120304 other downstream 3454437 9602771 ~ 9610254 (+) True G89453
TU120818 other downstream 4537323 10685657 ~ 10686056 (+) True G89805

Expression Profile