RNA id: XM_022673415.1


Basic Information

Item Value
RNA id XM_022673415.1
length 6456
RNA type mRNA
GC content 0.48
exon number 18
gene id nrp1
representative False

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 5728518 ~ 5821874 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAGAGTGAGCGACCGTGGGAAGACACACCTGGCACAGCTCACTCACGCGCTGGAGGAGTGTGTAGGGAgagtgtggtttgtgtgtgtgtgtgtgagagagaagagagagagagagagagagagagagagagagagagcgtgcatTAGAGGAACGCTCCTCACgcggagttttttttttggattatacAGCCTTCCTtcaccacagcagcagcagcaacagcagagcACCACGACCCCCATCAGcaacagcagcatcagcagctggacCCCGAGACACTCTGGACATCACTGGATTTACACACTGGATCCAGAGGCAGgCTGTGTATGCATGCGCGTGcgattgagtgtgtgtgagagagagcgtgtgtATGGGTGCGTGGTGAGCGCGTGAGGGACATGGCAGCCCCGGAGCTGGAGCGAGGAGCTGGGCTGGATGAGGCGCGCGGAGAAAGGAGCTGAGCGGCGGGATGAGCAGGGAATGACAGAGACCTGAACACAACAGCAACACTATCTATCTCTTTGTGACACGAGCTTGATTTCTGATCCAGAATCCGGGAATATTGATCTCTGAggattttctatttttcctgattttttttttggtgtgggACATTTTCTGGTTCTGGTCCAGTTTTGAATCGCCCGGACCGAGGATGCGTTGTTGTGGATTAGCGCTGGTGGGCTTACTGGGAGTGTTGGAGATCGTGAGGGCTTTCAAAAACGATAAATGTGGCGATAACATCAGGATCGCCAGCGCCAACTACCTGACCTCCCCCGGCTACCCAACCTCGTACTACCCCTCGCAGAAGTGCGTGTGGGTGATCACGACGCCAGAAGCTCACCAGAGGATCCTCATCAACTTCAACCCTCACTTCGACCTGGAGGACCGCGAGTGCAAatATGACTATGTGGAGGTGCGGGATGGTGTGGATGAGTCGGGGCAGCTGGTGGGGAAGTACTGTGGGAAGATTGCGCCCTCGCCCGTGGTCTCCTCCGGGAACCAGCTCTTCATCAAGTTTGTGTCGGACTATGAGACGCATGGAGCCGGCTTCTCCATCCGCTACGAGATTTTCAAAATCGgCCCAGAATGCTCGAGAAACTTCACCTCTAAGAACGGGGTCATCAAGTCTCCAGGTTTCCCTGAGAAATACCCCAACAACCTGGACTGCACATTCATGATCTTCGCCCCCAAGATGTCGGAGATCATCCTGGAGTTCGAGAGCTTTGAGCTGGAGCCCGACACACAGCCTCCCGCTGGAGTCTTCTGCCGTTACGACCGCCTGGAGATCTGGGACGGCTTCCCTGGAGtgGGTCCATACATCGGCAGGTACTGTGGACAGAATACTCCAGGAAGAATCATCTCCTACACTGGTATCTTGGCTTTGACAATCAACACAGACAGTGCAATCGCTAAAGAAGGATTCTCCGCTAACTTTACTGTGCTGGAGAGGACTGTTCCTGAAGacTTTGACTGCATGGAGCCACTGGGAATAGAGTCTGGTGAGATCCCCTCTGACCAGATAGTGGCTTCATCCCAGTACAACGCCAACTGGTCTCCAGAACGCTCTAGACTCAACAATTTTGAAAACGGCTGGACACCATTGGAAGATTCCAACAAGGAATGGATTCAGGTTGATCTCGGTTTCCTGCGCTTCGTCTCGGCCATCGGAACGCAAGGCGCCATCTCCCAGGAGACTAAGAAGAAGTACTTTGTGAAGTCCTACAAAGTGGATGTGAGCTCCAATGGTGAAGACTGGATCACCCTGAAGGAAGGCTCGAAGCAGAAGGTTTTTATTGGCAACACCAACCCCACAGATGTGGCCAAGACTCAGCTGCCTAAACCCACCCTGACCCGCTTCATCAGGATTCGACCATATACCTGGGAGACGGGCATCGCTCTGCGCTTCGAGATTTATGGCTGCAAGATTTCAGAGTACCCATGTTCAGGCATGCTGGGCATGGTCTCCGGCCTCATCACTGATGACCAGATCACTGCCTCGTCCCACACCGACCGCAGCTGGGTGCCAGAGAACGCCCGTCTGCTGACCAGCCGCTCGGGCTGGACGCTTCTGCCCCAGCCGCAGCCGTACGCAGACGAGTGGCTCCAGGTGGACCTGGGTCAGGAGAAACTGGTGCGTGGCCTCATCATCCAGGGTGGCAAACATCGCGAGAACAAAGTCTTCATGAAGAAGTTCCGCCTGGGCTACAGCAACAACGGCTCTGACTGGAAGATGGTGATGGAGGCCAATGGCAACAAACCCAAGCTTTTCGAGGGGAATATGAACTACGATACGCCAGTGTTGAGGACAGTGGAGCCTATTTTGACGCGGTTTGTGAGGGTTTACCCTGACAGAGCAACTCCAGCAGGCATGGGGTTGAGACTGGAGCTCCTGGGCTGTGAAATTGAAGCACCCACTATACCACCTACCACACCCGCTCCTCCCACCACCCCATCAGACGAGTGTGACGATGAACAGGCCAACTGTCACAGTGGAACAGGTGGAACTACCGTGCCTGAGACCACTACAGGAATGGGCACTGTACCAGcatTCCTCTGGTTTGCATGTGATTTCGGCTGGGCCAACGACCCCTCTTTCTGCGGCTGGACGTCTGAAGAGACGGGCTACAGGTGGCAGATCCAGTCCAGTGGAACTCCAACACTCAACACTGGCCCCAACATGGACCACACAggTGGCTCTGGAAATTTTATCTACACTCTGGCAACCGGAGCACAGGAGACAGAGGTGGCCCGGCTCGTGAGTCCGGCAGTGTCTGGTCAGGACTCAGACCTCTGCATGTCCTTCTGGTACCACATGTTTGGCTCACACATCGGCACACTGCATATCAAACAGAGAAGGGAGAGTGGCCAGACCACGGCCGACGTGCTGCTCTGGACGGTCAGCGGTCATCAGGGCAACCGCTGGAGAGAGGGCCGAGTGCTTATACCACACTTAAGCAAACCCTATCAggtggtGATAGAGGGTGTGGTGGAGAGGAAAAGCTGGGGTGACATCGCTGTGGATGACATCAAGATCCTAGACAGTCTCAACATGGCTGACTGCAAGGaCCCAGATGTCCCAACAGAACCAATGCTGCCTGAGGATAACTTCAATGAGATCATTGTGGACATCACCGACTTCCCAGAGATCGAAGACAACAACAATATCGGCGGAGCGGGCAACATGCTGAAGACCCTGGACCCCATCCTGATCACCATCATCGCTATGAGCGCCCTGGGGGTCTTCCTGGGGGCCATCTGCGGCGTGGTGCTTTACTGCGCCTGCTCGCACGGCGGTATGGCCGACAGAAACTTATCCGCTCTGGAGAACTATAACTTTGAGCTGGTGGACGGCGTAAAGCTAAAGAAGGACAAGCTTAACTCACAGAACTCGTACTCAGAGGCATGAGGCGCCAACCAATGAGAGAAAACCTCTCCTCGAGGGAGGGCGGGCTAACTAAAGGACTACCGCCGCCCTCCCGTTGGAGGAGGACAAGGCTCTGAGGTTCTGAGAACCAGTGGGAGTAGAATTGGGACTGAGCCATGCTTTTCTCAGGAGCTGCAGTGACAGAACCTACCAGTAGGGGACACTGtgtacaaaacaaaactaaacaaaaaaaaacattgaaaatgatgaggattaagaaaacaaaacaaaagaaatatgtacaGATGATTTAgatgattattttaattttttattttattattttgtattatttttagttgCTCATTTCTACAATCGGATGCTGGTGTTGAGACCAATATATGAAAATGTTATAcgtatttatcttttttttcttcttttcttttgttctttaaCTGGGAGGAAAATCAGTGTGTTTAAGCGTcgttgtttttgtgtttcaaGGAGATGtgtgtaaaaagaaaatcccaAATGAACCATAACTGATAATGATGGGTGGGTACTTGACCCGGAGCGGGACGAGTGCAGATCTTAGGGTGTGGAGCTGTGATCTGGCCCTGTAGGATTTCAGCTATGGTTCAGTCAGTGCCTTTGGTACATCTTTTTTGGCctcttttgttgattttttgaagttttttacATCCCTTTAGTTctgaaacaaaaacagacaaacaaaagaaacggaaaaaaaaaaaaaaaaaaacaacggaATATGTTGGTCACATCTGCAAAACATGCCCCGGTTTATTCATCGCGCTTTAATGTTCAGAGCTCACATATTGTACAtaagttttaatatattttattgcccTTTTCAAAGAAAACGAGtaaaaggacaaaaaagaaGCTGCAGTatccctttttttctttggtcGTGTGTTGTAAATACAATCCGTCTGACTGTTTTGTGAAAGTGAAACGTGTGCTATTTCCGTCCTTCGCTTATTTTGCCTCCCCTCCCCAGAGATGCAGCTCATGTGtacaagctaagctaagctggtGGTTTGACAAATCCtgtgggcacacacacacacaaacactcacacacacacatatacaaatacacacacatttacatagaCCAACATAACCACACATAGACTCATGACACATGACACAGACTCAATGACACTCTCAGACTAGACTTCTGATGAACCTCTGCTCCTACTCtgctaaatatctaaatatggAACATTGTCCGAGGAATATTGACTGATGTGGCTCCACAAATGCTTCATATCCTTCACTGTACGTCTACTTTTACATCAGCCTGGATCCTGGACACATAATTTATCCCATAGACATTTCAGAAGGTCTGTTAAATCTCTCCGACTCTGCTCCATGTCTCCATGACTATTTCTTCATGactttctatatctctctctttctaaacaACGTTCTGGATGTCTCTCAGCAGCcgtaccaaaaaacaaaaaaaaaaacaaaaatgaagctTATCATCATCGCCTCACGTTCTTCTTGAAAAAGCTGCCACCTGCTCAGTGCCACGCCCCGTTTATCTTCACCCGCCCCTCTACAAAGTGCTACTTACACGTCTGCTCACCTCAAACGCACTTTGTCTTCAACGTCAACTTTTCAATGTCAACTTTTGGGGCTACATGTCTTGAAAAAAAGACGCATGTCACGAATGTGGGGGTGCCTCAGGGTGCCTCAATGGTGCTATTTCTTCATATGTTCATATGTTATCATATGTATGAGCATCTCTTATCATTGATGGGCTCATCATGCTGCCATCATGCTCATCACTGGCCTCAGAACTGCTGAGAACTGCTATCTCatgctgtctgtgtgtctcaTTGAGGATGCCGTACTCACTTTGGTACAGACAAGTTGGTACAGGACTCGGCTGACTGGACTTGTCATGTTGATGTCAAATCCTGACATCATCCTTTGCATTTTGTCTGTACCAAAGGACCGTGGCCCTCAAGCTCTATAAAGGGGCCGATAACGTAATAACACACTgtccactgcactgtctactgtcTAAGAACAGCATTGAAACCAGCCAGCCCATCCTTAACAATTCAAACTGATAATGCACTGGACTGCAGGAAGACAGAACTACACGAAAAGACTGAAATATCTGCTGAAATATCTAATGCTGGGTCGTCGTTCACCGTCATTTGGATTCATCACTTGCTTTCCCTCAAAACCATCAGAAGAACATCATAAATCATACATATCACGTGTAGTATAATCAACAGGGCTCCACCCATCCTCCCTCACGCCGACTCCTGTTTTAAAGGTTTCTCTAGGTATGTTtatgtgctgtgttgtgttctgTGGCAAAGAAACAAAACCCAACCCCCTCAACCCATCAACTCTTCATCCACTCCTCATTTCCCTCCAGTATCTCCCTCCAGTAACTCACCAACACATCTCTCAAAGCTACATGTGTGTGTCTTTAGCTGAAGCTAAACAGGGACGAGCTTCAGCAAAGGTCGGATGAAGAAAAGCATACTGTAGCGTcaagggaaaaaagagaaaaaaaaagagaaaagaaacgATGTTGCACTGATAGATATATTTAAAGAGGTTTATGTGTTTATAGCATTCatttgtaaaaaacaaaatcagaataaaaaaaagacagtgttcttttttttaatagtttcagGATATGTAATACGATTCTGAAATATACGGTTATCGAGATGTTTTCATTATTGAAAAAGGTATACGAAATTtcctatagtaaaaaaaaaagattcccaTTTACCTGAACGATTATCTCTTCGTTTTTGTACTGTCGTTGGAATTTtgtgctgattttttttacgagaagaagaggaaaagaaTCTTTTATTTTCAATACTGCTTCTGTAATTGCTGTTGTAGGAAGAAAAAacctgaataaaacagcaaggCCTTAAAAACTGAAATCACTGTTTTGTATTTCCAACATCTGCTTCATGAAAAGCGAAAAACCGCCGATGTCTACTGTCTCTGATCAGCTCAGATCAACGGACGATCCAAAGATTCCGAtccaataaatgttttttcctATGAA

Function

GO:

id name namespace
GO:0035767 endothelial cell chemotaxis biological_process
GO:0030947 regulation of vascular endothelial growth factor receptor signaling pathway biological_process
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0007508 larval heart development biological_process
GO:0001755 neural crest cell migration biological_process
GO:0045765 regulation of angiogenesis biological_process
GO:0038084 vascular endothelial growth factor signaling pathway biological_process
GO:0048538 thymus development biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0051216 cartilage development biological_process
GO:0001570 vasculogenesis biological_process
GO:0008045 motor neuron axon guidance biological_process
GO:0048675 axon extension biological_process
GO:0007413 axonal fasciculation biological_process
GO:0007155 cell adhesion biological_process
GO:0071526 semaphorin-plexin signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0019838 growth factor binding molecular_function
GO:0008201 heparin binding molecular_function
GO:0017154 semaphorin receptor activity molecular_function
GO:0005021 vascular endothelial growth factor-activated receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119139 lncRNA upstream 91256 5637020 ~ 5637262 (+) True G88538
TU119133 lncRNA upstream 431979 5293618 ~ 5296539 (+) True G88532
XR_002650425.1 lncRNA upstream 687508 5039855 ~ 5041010 (+) True LOC111193318
TU119055 lncRNA upstream 819478 4876300 ~ 4909040 (+) False G88475
TU119053 lncRNA upstream 830690 4876300 ~ 4897828 (+) True G88475
TU119146 lncRNA downstream 23737 5845611 ~ 5902704 (+) True G88541
TU119247 lncRNA downstream 185221 6007095 ~ 6015307 (+) True LOC111193319
XR_002650426.1 lncRNA downstream 186199 6008073 ~ 6014265 (+) False LOC111193319
XR_002650427.1 lncRNA downstream 186217 6008091 ~ 6014265 (+) False LOC111193319
TU119249 lncRNA downstream 189117 6010991 ~ 6015307 (+) False LOC111193319
XM_007238651.2 mRNA upstream 265493 4911678 ~ 5463025 (+) True pard3
XM_007238652.2 mRNA upstream 265493 4911678 ~ 5463025 (+) False pard3
XM_015602813.2 mRNA upstream 265493 4911678 ~ 5463025 (+) False pard3
XM_015602814.2 mRNA upstream 265493 4911678 ~ 5463025 (+) False pard3
XM_022673414.1 mRNA upstream 819544 4889735 ~ 4908974 (+) False cul2
XM_022673416.1 mRNA downstream 9959 5831833 ~ 5874724 (+) True itgb1
XM_007238660.3 mRNA downstream 9960 5831834 ~ 5874724 (+) False itgb1
XM_022673418.1 mRNA downstream 53830 5875704 ~ 5926455 (+) False LOC103042448
XM_007238656.3 mRNA downstream 73739 5895613 ~ 5926455 (+) False LOC103042448
XM_022673419.1 mRNA downstream 75833 5897707 ~ 5926455 (+) True LOC103042448
TU119113 other upstream 604792 4911656 ~ 5123726 (+) False pard3
TU119068 other upstream 921845 4796822 ~ 4806673 (+) True G88486
TU119049 other upstream 1047681 4680113 ~ 4680837 (+) True G88473
trnap-agg_3 other downstream 1421032 7242906 ~ 7242977 (+) True trnap-agg_3
TU119517 other downstream 1756736 7578610 ~ 7579960 (+) True G88849
TU119784 other downstream 2424340 8246214 ~ 8249434 (+) False sumo1
TU120304 other downstream 3780897 9602771 ~ 9610254 (+) True G89453
TU120818 other downstream 4863783 10685657 ~ 10686056 (+) True G89805

Expression Profile