RNA id: TU119457


Basic Information

Item Value
RNA id TU119457
length 836
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G88798
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 7283189 ~ 7337692 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGGTGTATTGTATGGATTTTAATTCCAGTCAAATTAGGTTCAGTTCAAAAAAGCCAAATTTATTGCAACATTCATAACAACATCATCCGCCTGAGGGAACAATATATACTGGAAAAGTTCTGTTCATTTTCTCATAGTCTTACACAAAGACACGTCCATACATCAAACGCTccagcacacacatacatacatacatacacacacacacacacacacataccacacttGACACTTGCTCACTTCAGCCATCCCCATGCAATGCAAAGACACAAACAAAGACACAGGGACTGGAACACGTGAAAAAAGCCCTTTCACACTGACGACGAGGACACAGACCAACACAGGGGGCGATCGAGGCACTGCTAAAGTCACACAAGCATGCAGACGCAGGAAAACCTTCAAAAAAACGTCCCTTTTTGagattaaaagataaataaagaatgGGAACCAACGAAGGTTTCTTCTCAGACATAATACACAAAATCAAAGCATCCCCACGTCCGTCCATACGTTAAAAAAGTAGAAGCACAGCAGGGGTGAAGACTTCAGAGATACACAGACTCAAGACCTCAAGGCGGCGTGTTTTATAAGTTATAGGCTGAAGGTTgggacatttttttctttctctttttttctttctctttttttgcgtctgtgtgaatgtgttcTGAGACAGTGGTCTTCTCGCCAATTCACCAGAATCTCAGAACTCTTCAAATAAAGGGGTAGGAGTAAAAGAGTCAGTGCTGCCACCAGAGGCCCAGGTCAAAGCTCGAAGGCAGGGAAGCAGGAGGCTTGGGGCTGGGCCAGGTCTGACAGGAAGTGGATCGCTCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119414 lncRNA upstream 165369 7171183 ~ 7171412 (+) True G88768
TU119406 lncRNA upstream 218154 7114543 ~ 7118627 (+) True G88761
TU119407 lncRNA upstream 218154 7114543 ~ 7118627 (+) False G88761
TU119397 lncRNA upstream 292917 7043453 ~ 7043864 (+) True G88752
TU119395 lncRNA upstream 295269 7041094 ~ 7041512 (+) True G88750
TU119464 lncRNA downstream 14761 7352453 ~ 7395810 (+) True G88799
TU119467 lncRNA downstream 88331 7426023 ~ 7477250 (+) True G88801
TU119536 lncRNA downstream 331563 7669255 ~ 7714191 (+) True G88867
TU119557 lncRNA downstream 401729 7739421 ~ 7740934 (+) True G88886
TU119583 lncRNA downstream 517177 7854869 ~ 7855150 (+) True G88906
XM_022673437.1 mRNA upstream 10033 7268729 ~ 7326748 (+) False vopp1
XM_007233390.3 mRNA upstream 10033 7268730 ~ 7326748 (+) True vopp1
XM_007238663.3 mRNA upstream 1335633 5992126 ~ 6001148 (+) True LOC103044377
XM_007238662.3 mRNA upstream 1348283 5929824 ~ 5988498 (+) True LOC103043891
XM_022673422.1 mRNA upstream 1410326 5913261 ~ 5926455 (+) False LOC103042448
XM_022673443.1 mRNA downstream 390847 7728539 ~ 7735786 (+) True LOC111193320
XM_022673348.1 mRNA downstream 426185 7763877 ~ 7785181 (+) True vps16
XM_007248886.3 mRNA downstream 448630 7786322 ~ 7796482 (+) True rgn
XM_007248885.2 mRNA downstream 459641 7797333 ~ 7803815 (+) True LOC103027817
XM_022673447.1 mRNA downstream 471324 7809016 ~ 7817569 (+) True LOC111193321
trnap-agg_3 other upstream 93804 7242906 ~ 7242977 (+) True trnap-agg_3
TU119113 other upstream 2213055 4911656 ~ 5123726 (+) False pard3
TU119068 other upstream 2530108 4796822 ~ 4806673 (+) True G88486
TU119049 other upstream 2655944 4680113 ~ 4680837 (+) True G88473
TU119517 other downstream 240918 7578610 ~ 7579960 (+) True G88849
TU119784 other downstream 908522 8246214 ~ 8249434 (+) False sumo1
TU120304 other downstream 2265079 9602771 ~ 9610254 (+) True G89453
TU120818 other downstream 3347965 10685657 ~ 10686056 (+) True G89805
TU120819 other downstream 3350574 10688266 ~ 10688820 (+) True G89806

Expression Profile