RNA id: TU119395


Basic Information

Item Value
RNA id TU119395
length 419
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G88750
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 7041094 ~ 7041512 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cagtaaatcaaattgttatcaaatgccaccaagacagccttaaagaacacattccatactagtAAGGACATGAATAACaaaggatattactgtatcattttggagtaattggataccaagcttaggaaaaatgtctattttcttttgcataaaccagattttaaggtccTATAAAACctgcaaatcaaattgttatccaatgctaCCAAGACTACCTTAAGAAACACATTCCTTACTATTAATGACGTGAGTAACaaaggatattactgtatcattttggattaattggataccaaatttaggaataaatgtctattcggttgtgcataaaccagatttcagagtcctataaaaccagcaaatcaaattgttatccaatgccaccaagactgtcttgaagaacacattctatactatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119393 lncRNA upstream 472 7040366 ~ 7040622 (+) True G88748
TU119365 lncRNA upstream 168228 6865261 ~ 6872866 (+) True G88721
XR_002650410.1 lncRNA upstream 513875 6518455 ~ 6527219 (+) True LOC111193292
TU119331 lncRNA upstream 528290 6512441 ~ 6512804 (+) True G88691
TU119329 lncRNA upstream 550448 6490032 ~ 6490646 (+) True G88689
TU119397 lncRNA downstream 1941 7043453 ~ 7043864 (+) True G88752
TU119406 lncRNA downstream 73031 7114543 ~ 7118627 (+) True G88761
TU119407 lncRNA downstream 73031 7114543 ~ 7118627 (+) False G88761
TU119414 lncRNA downstream 129671 7171183 ~ 7171412 (+) True G88768
TU119461 lncRNA downstream 241677 7283189 ~ 7337692 (+) False G88798
XM_007238663.3 mRNA upstream 1039946 5992126 ~ 6001148 (+) True LOC103044377
XM_007238662.3 mRNA upstream 1052596 5929824 ~ 5988498 (+) True LOC103043891
XM_022673422.1 mRNA upstream 1114639 5913261 ~ 5926455 (+) False LOC103042448
XM_022673437.1 mRNA downstream 227217 7268729 ~ 7326748 (+) False vopp1
XM_007233390.3 mRNA downstream 227218 7268730 ~ 7326748 (+) True vopp1
XM_022673443.1 mRNA downstream 687027 7728539 ~ 7735786 (+) True LOC111193320
XM_022673348.1 mRNA downstream 722365 7763877 ~ 7785181 (+) True vps16
XM_007248886.3 mRNA downstream 744810 7786322 ~ 7796482 (+) True rgn
TU119113 other upstream 1917368 4911656 ~ 5123726 (+) False pard3
TU119068 other upstream 2234421 4796822 ~ 4806673 (+) True G88486
TU119049 other upstream 2360257 4680113 ~ 4680837 (+) True G88473
trnap-agg_3 other downstream 201394 7242906 ~ 7242977 (+) True trnap-agg_3
TU119517 other downstream 537098 7578610 ~ 7579960 (+) True G88849
TU119784 other downstream 1204702 8246214 ~ 8249434 (+) False sumo1
TU120304 other downstream 2561259 9602771 ~ 9610254 (+) True G89453
TU120818 other downstream 3644145 10685657 ~ 10686056 (+) True G89805

Expression Profile