RNA id: XR_002650410.1


Basic Information

Item Value
RNA id XR_002650410.1
length 358
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id LOC111193292
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 6518455 ~ 6527219 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGAGAATGGAGGAGGAAAGACTAGAGAGGGAGATGCTGAAGGGGATGGAGGAGGAAAGGCTAGAGACTTACAGGCTTAATCAAGTCAGGGCCTACAGCCAGCTATGGAAAACTCTGCTCCTGCTGCTTTCCATTGTTCCAGTTTCTAAAGGAGCAGCGCGAGATAAAGGGAAACACTTGCCAAGAATTCATAGGACCAAGGACCATCCATGTTTCAGTTTGAAAGCTGTTCGCTGTTGTTATTCCAATGCATGACCAGTGGACAGGATATTTGCTCTTGTTCTACAGTAGGCACCAGGTTTCAAAAGCACGGAATACAGAGCATTTGTGAAGGATATAAAAAAGTGATGGTTATTAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119331 lncRNA upstream 5651 6512441 ~ 6512804 (+) True G88691
TU119329 lncRNA upstream 27809 6490032 ~ 6490646 (+) True G88689
TU119319 lncRNA upstream 61733 6456433 ~ 6456722 (+) True G88685
TU119316 lncRNA upstream 102567 6415572 ~ 6415888 (+) True G88682
TU119293 lncRNA upstream 243158 6249856 ~ 6275297 (+) True G88659
TU119365 lncRNA downstream 338042 6865261 ~ 6872866 (+) True G88721
TU119393 lncRNA downstream 513147 7040366 ~ 7040622 (+) True G88748
TU119395 lncRNA downstream 513875 7041094 ~ 7041512 (+) True G88750
TU119397 lncRNA downstream 516234 7043453 ~ 7043864 (+) True G88752
TU119406 lncRNA downstream 587324 7114543 ~ 7118627 (+) True G88761
XM_007238663.3 mRNA upstream 517307 5992126 ~ 6001148 (+) True LOC103044377
XM_007238662.3 mRNA upstream 529957 5929824 ~ 5988498 (+) True LOC103043891
XM_022673422.1 mRNA upstream 592000 5913261 ~ 5926455 (+) False LOC103042448
XM_022673437.1 mRNA downstream 741510 7268729 ~ 7326748 (+) False vopp1
XM_007233390.3 mRNA downstream 741511 7268730 ~ 7326748 (+) True vopp1
XM_022673443.1 mRNA downstream 1201320 7728539 ~ 7735786 (+) True LOC111193320
XM_022673348.1 mRNA downstream 1236658 7763877 ~ 7785181 (+) True vps16
XM_007248886.3 mRNA downstream 1259103 7786322 ~ 7796482 (+) True rgn
TU119113 other upstream 1394729 4911656 ~ 5123726 (+) False pard3
TU119068 other upstream 1711782 4796822 ~ 4806673 (+) True G88486
TU119049 other upstream 1837618 4680113 ~ 4680837 (+) True G88473
trnap-agg_3 other downstream 715687 7242906 ~ 7242977 (+) True trnap-agg_3
TU119517 other downstream 1051391 7578610 ~ 7579960 (+) True G88849
TU119784 other downstream 1718995 8246214 ~ 8249434 (+) False sumo1
TU120304 other downstream 3075552 9602771 ~ 9610254 (+) True G89453
TU120818 other downstream 4158438 10685657 ~ 10686056 (+) True G89805

Expression Profile