RNA id: XM_022673424.1


Basic Information

Item Value
RNA id XM_022673424.1
length 3410
RNA type mRNA
GC content 0.43
exon number 15
gene id LOC103042448
representative False

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 5875704 ~ 5926455 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttgccaaaaatattcacTCGCTTTGTAAGCTCTAATTCACCCCAaaattcccccccaaaaatgggCTGTCCCAAACTGTTCACGCAATGTTAGAAGCAggacattataaaaaatatcttGGTTAGCTGAAGcattaaaagttattttgagtGGAACTATGGGGCGAAGCTCAACTGCTGAAAAACAGccccacaccataatcccccctccaccaaactttatacATTATCTATAAAAAGGCCTCCAACCTCACCAACCACCAGGACATAAGGGATCTAAAGATGTCCAGAGTAGGTCTTGTGGAGTTCATGCTTCAAAAGTGGCCTCTGTGAATGCCATGATGACCAGGCTGGAGATGATCGCCAAACAGAAAGGACTGGGCTCCCACCGGAGTCCCACAGAAACTGCTTGCTACCTGACAGCAGATCTGTTCTACCTGgaggtgctgctgctgcctgggGGAGGGGTGCAGGATGTGAAGGTAGCCCAGCATGGTGAAGCTCCTGAAtcaAATTCAGCACTCTGTCAGTTGTTGAGGATGAAGAAATTTAAGGAATTCTCAGTCAAATTAGATGACCTTGCTTCTCTCTACAACATACCAGGAGACAGTGATACAAAGATAAAAGTGTATGCATCACTTCAGCATCTGCAGAAAGACCTACTCAAGATATCTAACTTACCAAGACGTCTGATAGAGAGCGATGTCCATGTTGACATGGTTCTGAATGGCAGAATTGGGAACTTCGTGCCCTGCAGAGAAGGAAACCCAATGAGCATCCAGTACTATATCAGGCCCTCTGATGTTCTGATGGAGATGTTCTGTCCAGGTGAAGGCAGTCGTGGCCAGGTTGCCATGGTGGTGGTAGGTGCCAGTAGCACTACACACATGTTGCAGATGGAGTCTCATATCCTTACTCCCCCTCAATTCGATTCACTGGGGTTTCCAGTGTTTAGGCCGATGTCTGAAGTGAAAACTGAGTCACTCCCAGCCTTCTTTCTTCTCAAGCTCCAGCCACCAGTACCCACACTCAACTCCTTCATCCAGCAAATGAACCAAATAACAGATGTTACACCAGAGGCTGACCTGCAGGTGGAGCCCCTGTTCCAGCTGATAAAGCAGCTCAGCCTGACAGAAAAGACCTGTGAGAGCATGTGTGATGAAGAGGCTAGTCACTTTCATGTGACCCTGCCGGATGCTGAGCTTCATAGCTATGTGTTCGGTGGTGCTGAGTGGAAGTGTGACTTGTGGAAAGGTGCTTTAATTCATGCAGTTCCCTTCACCCATCCTGCCCACGTACCAGCTTTACTGGAGCTCCTCCGCCATCAGTCAGTCATCAATGCCTTATTAGCAAGCTGCATCACCAGACATGAACAACAACCagGTCTCACATATGAACTGAACTGTGAAGTTCTCCCGGAGTCTGCCTTTAGCTTTTCTGTGACCTTCAGCCTATTGGACAGTGACTCACTGGCTGTTTTGCTGGTTTCTGTGTTGGACTGTCGTCAGGTGAAGTGCAGGCTCCTGATGGCTGATTTAGTGGATCCTTCTTTGGATGACTACATCTCCAGAGTGCTCACACGGTGCATGTCTATCCCCATCACCATGAGAGCCATATGGAGGAGAATAGCCAGTCTTAGACCTCCAGCACCCCAGTTTCCTGAACCTGTCTGTGCTCTTATGGCTGAAGGCTCTCCCTCTGTGGCCCCCCACTCTGCTGTAGAGAGCTTCCCAGTAACACTCCCCACTGCTCTGCTCTCCCCAGAGCCCATGGAGGAGGATGGGCCCTCTCCTCCTAGTCACTACGTCATGTCTGTCGCTGCCGCCCCGGCGGTTGATGGTGCTAATACAGATGCAGTTGCTAACCCTTCCCCGTGTGCCTCTATGAGTGTCTATTCCCACTGGGGGACCAGCAGCCTCCCAGCAGAGCTCATTTAGAAGAGTGTGAAGGGTGGGGCTGTTGTTGAGAGCAATCTTagtattatttaccttttttaagaaaataaatttaataaagatgatattttaaaaattaagaagCTGTCATAGAAAATGaatcaaattatttttattagaaaattaGACTACCTTTTGAAAATGTTTAGAGATATCCTTAATCATTTGAAATtaattctaaattaatattaagtaTTATAGAATTGTGGCTTATATGTGGCATATTATGGTATTatgcattaattaaaattaacacAGATAATAGAGTGTAGTGTTGGGAGTCTTGTCCAAGGACtgatgtagtgtagtgtggagtGTTGGTGAGAAGGTAGTAGTGTTATCTGTTACTCTACACCAATCTCCTCAGGGTGGAGGTCCTTGCTAATTgaaatggaattatttaaaaaaggttaGCTTGTCCCAAATGTAAGAAAGGCAGTGTACTATAGCTAGATCTTTTGAAggaaattaaaaacacaaactgtAGTGAATAGGGCAGAGAGAGAACATGCAACAAGCACTAAACAGCCACCTCAGCACCCAGGGAGCAATTGGGGTTAAGGGTTTTAATAAAGGGCCCCTTCAACTGGTAATGCTCAGGGATGGGATGGTCTTGTTCCTTTACTTCAATTTGTTGACTTCCTGCCTGTCCAGCGGATTGAACTGGCAAACTTACTGTTCTAAAACTATTTTTGCAACATTAATGGTCACCTGGTTTTGATACAGCAGCCTTCCATAACCCCAAATCAGAAGAAGCTGGAGcagtataaaaaatgaaaaaaataaaatcatactgCACTTCACTTTTATTTTGCAAATTTCGCACACAAACAGGCCAGGCCAGCACCTGTCCCCTTTTCTGCCACAGCCATGTCGTTGtgatgtgtgcagcatgtggttttgcagtGTCTTGTTAAAAACTGCACGGATGTGCCTAAAGTATTTTGCCTTGAAAGAAGcatatgttacatttatttgaGTGCAACTCTTTATTGCAGTGCCTGACAATGGTTTGGCAAAGTAATTCTTTGACCATGTGGTTCTGTTAGCTATTGTTAAATGATAGTTGTTGAAGTACAGCCATCTTAGTGTTCGGAGGCCATGTGTGTCTTACAAACTAAAACTCTTCCAGATTCATCAAATGGTTTAATGATGGTATTCACAAGATAGTATGCACAGGAAATAATTGTTGGatgcaagtaaaaaaaatggaggTCCTGCTGTCCATATTTGCTTCCTTTTGTTAGATATTATGATAACATTCACttctttgtgttattttttgcatttttcctaCTGTCCCAAatgttttctgatttggggtgtAATAGGTAATTATTTGAGCTTCTGCTAAAGCAGATATCCAAAGTTACTTACATTtcaattattttacacaaactaAGTACACAAATTTAATGTAAAGTCTTGTAAAGGACTGTTATTGCTgtcaataaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119146 lncRNA upstream 13941 5845611 ~ 5902704 (+) True G88541
TU119139 lncRNA upstream 279383 5637020 ~ 5637262 (+) True G88538
TU119133 lncRNA upstream 620106 5293618 ~ 5296539 (+) True G88532
XR_002650425.1 lncRNA upstream 875635 5039855 ~ 5041010 (+) True LOC111193318
TU119055 lncRNA upstream 1007605 4876300 ~ 4909040 (+) False G88475
TU119247 lncRNA downstream 80640 6007095 ~ 6015307 (+) True LOC111193319
XR_002650426.1 lncRNA downstream 81618 6008073 ~ 6014265 (+) False LOC111193319
XR_002650427.1 lncRNA downstream 81636 6008091 ~ 6014265 (+) False LOC111193319
TU119249 lncRNA downstream 84536 6010991 ~ 6015307 (+) False LOC111193319
TU119268 lncRNA downstream 188060 6114515 ~ 6148334 (+) True G88637
XM_022673416.1 mRNA upstream 41921 5831833 ~ 5874724 (+) True itgb1
XM_007238660.3 mRNA upstream 41921 5831834 ~ 5874724 (+) False itgb1
XM_007238653.3 mRNA upstream 94771 5728518 ~ 5821874 (+) True nrp1
XM_022673415.1 mRNA upstream 94771 5728518 ~ 5821874 (+) False nrp1
XM_015602814.2 mRNA upstream 453620 4911678 ~ 5463025 (+) False pard3
XM_007238662.3 mRNA downstream 3369 5929824 ~ 5988498 (+) True LOC103043891
XM_007238663.3 mRNA downstream 65671 5992126 ~ 6001148 (+) True LOC103044377
XM_022673437.1 mRNA downstream 1342274 7268729 ~ 7326748 (+) False vopp1
XM_007233390.3 mRNA downstream 1342275 7268730 ~ 7326748 (+) True vopp1
XM_022673443.1 mRNA downstream 1802084 7728539 ~ 7735786 (+) True LOC111193320
TU119113 other upstream 792919 4911656 ~ 5123726 (+) False pard3
TU119068 other upstream 1109972 4796822 ~ 4806673 (+) True G88486
TU119049 other upstream 1235808 4680113 ~ 4680837 (+) True G88473
trnap-agg_3 other downstream 1316451 7242906 ~ 7242977 (+) True trnap-agg_3
TU119517 other downstream 1652155 7578610 ~ 7579960 (+) True G88849
TU119784 other downstream 2319759 8246214 ~ 8249434 (+) False sumo1
TU120304 other downstream 3676316 9602771 ~ 9610254 (+) True G89453
TU120818 other downstream 4759202 10685657 ~ 10686056 (+) True G89805

Expression Profile