frrs1


Basic Information

Item Value
gene id frrs1
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 16074686 ~ 16092755 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250414.3
CCCTGAGCCGGGAGCCAATCAGCGAGCTGCTCCGTGTGAAAGCCTGAAACTCCGCCGAGCTCTGCGGAGAGTTAAAGGAAACAAAGACGCATGGAGctTCTTCCAAAGCCTTGGACCCTCGTGGTCCtgtttattgtaattttgaGGTCTGTGGTTTGCTTCAGCAATGGGAAGGTATCCCAAGCTTGCGGGGACATGGTACCTATGCATGGTTATACTCCCAGCCCCGATCCTCCTCCTGGCAGTCTCACTGTGGATAAAACTACATTCAGACCTGGAGACCAAATTAAAGtaacatTCTCATCAGTCCTCTCGGACAAAAAAGGACACTTCAAAGGCTTCCTTATAGAAGCTCGAAATGCAAGAGACCCTGATGCTGGAGCTGTGGGATCTTTTACTCTGCTAAATCCTGCCATCTCACAGCTTCTTAACTGTGGTGATGGAGAGGGCTCTGCAGTGAGTCACACTAGTGACTCATCGAAGACGGAAGTTCAAGTTATGTGGACTGCACCCCCGGACCCCCCTCCTAACGTCCAGTTCCTGGTTACTGTGGTTCAGAAATACAATCTGTACTGGGTCAGGGTCCCTGGGCCTGTAGTGACTCTCTATGGTGCATCTCCGCTTCCACCGCTATCTACAGCTGGACAAGCAACATCTAAGACTACCACATCCTCAGGAACTATGCCCCGCCCTATCACCTCAGATGGCTGTGGAATTACAAAGTCCTGTCTGAGGGAGCCTGCAGCCTGTGATCCACAGAATGACGCCCTCTGTTACTTCTTGTCATTCGCAAAGGAGGACGATAGCGTGGTGTTTGAGCTCAGTGGTCCAGCACCAGGCTACGTCTCCTTTGCCTTATCCACTGATAAATGGATGGGTGAAGATGATGTTTATCTGTGCATTAATGAAGGCAGCCAGGTCAGCATTAATGCAGCTTATGTTCAGGGAAGAACACATCCAGTGATTGCTTCAGAGAATGTTTTGAGGGACACAGAGGGGAGGCTGGTGGACGGAGTCATCCAGTGCAGATTTCGCAGAGTTGTACGCATTCCAGCTCCAAATCAAAACAGATCAAATTTAGATGAAGCACACTACCTCTTCATGGCTCACGGTCGAGCAGAGAATGGGAGGACCCACAGACATGACCGGCAGCCTCTCATTTCATCAAATCCAGTGTTCATTACTGGCTCTCCAGAGGATCTAACTGGCTCTCGCTCGCCCTTACTCATCAAATTCCACGCTGTCTTCATGCTCATTGCTTGGATGACGACCGTCAGCACTGGAGTCATTATCGCCCGATACTTCAAACCAAACTGGCCGGACACAACTCTGTGTGGACAGAGGGTTTGGTTTCAGttccATCGAGCTCTAATGCTTGTCACAGTCCTTCTGACAGGCATTGGCTTCATATTACCTTTCATATACAGGGGAGGCTGGAgcaagcgtgCAGGCTCACACCCTTACCTGGGCTGTACTGTTATGGCTCTGGCTCTTATCCAGCCCATCATGGCTCTGTTTAGACCTGCTCCAGACTCCTCCAGGCGATACATTTTCAACTGGCTTCATTTGGGAACAGGCACGATAGCCCAGGTCATTGCtgTTGTGGCCGTTTGTTTGGGCATCCATCAGCAGGCCCTCTTGCTGCCTGCCCCCTGGTCCACCGGAATCGTGGCTGGCTATGTAATCTGGTTTGTACTTGCAGACTTGATTCTCGAAGTACACAGCAGAGGTCTGTTCCCCATAGGGcaattttttaagcattttgaaGTCCACACAGAAAATATACAAACTGAAGACAAAGAGGAGATTCTGTTTGTTCCGTCAGAAGGCCAGAGCTGCATTAAGGGACCTCGTTTTAAAGAGGTTGTTCTGGTAGTTTATCTGTGTGGAAATCTTGTGTTCCTGACTATTCTCCTTGGCACAATCGGAGGGGTATGACGTACATACAGTGCATAACAAACCATGTGCCTGACTACTGTCACCTGCTGCATTAGGAGCATCTGTTCAGACAGAAAGTGCCAAGAACTTATTTAAAGGGGAACAGTCATGTTGAgcctttatgtgtgtgtgcatgtgtgtgtgtgtgtgtgtgtgtggaagatgGTGCTATGTTACTTCATAACAGAGCTTTGAAAATACTCAAAGACCATTTCACAGAACAAAACGAGGAAAAACCTTTTTTAGTGAGGTCTTCAGGGAATTTTTAAAACAGAAGATTCATATCCCAAGACATATTGTTTTGGCATGCAGTGTGCATGGTCTACACATTGCTAATCATAACGTCCACTAACCCGTTCCTTTTTTACCCTTCTCATTAACAGTCAATGCCTTTCTATGCACCTAAAATATAATGGAACTGAATTTAGATTCGCTGCTGTCTTACTATCCTTGCCGCAGAAAAGCCTTAAATATTTCTTACTTTGTAAAAACAACTACcaaaaccaaataaatataaaaaagtgtttgttttaataaaaaaaacattattgatGAATCGACCAATTGTGTGTTCCAATAATGTTCtactcagaaaaaaatatttttacattgactttattGAGATTTACAATGAATTTCTTCACCTGTAACATTTGGAGTTACAATGTTTTTGTGTGacactgtttatttgttgtaatttctgtACTGTTAGCTTCTGTAATATACACTTAATCAACTGATAAGCTTGTTGTTAAGCTGAAAGTGTCAGtcttattaacaaaaaaactgCTGATTCTATATCCCAAACTCGAAACACTTAACAAGTGCACTTCTGGTCTTAGTACTTAGTAATATGGGAGTATATATACTATTTAGTGTGGAAGTGTGCAGTATGGGACGCAGGCTTTGTGTTTGTTGTAAGAACACatagttttaaatgtgtttcctCAACTTTCCAAGCATCTACACATTTTCATCTCTGAGAGATGTAGTATTCAAGTTTTATACATTCTAAAATATAACAGTATCAGTATCTCTTTGTGCCGCCAGATATTAGGAGTTTAGTGTGACTGTTCCCCTTTAAGGTAAAGAGACATCATCAGAAACTTTATTGGCAAATTGGTATGCAAATTACATCCCGGAACAATGTTTCAGGCTATTTTGAAATACATGCTCATAGAGCTTGGATGTATAAATGAATATGGAGTTACAGTACAGCTTGTAATACTTTCACATTTATattgagaatatttttaaattattgacTTGCTGTTTTCAGAAATGATTTGTCATCAAATATGTTTTAGAACTGTTGATTGTGCTCTGTGATTAATAGTTAATAGtgtcttttacattttacagctcTGATATTGTCATTCTTGTgattatttttacacaaaattaactttttgtctgtattgtgtgtgGATGTATTGATGAATGTATGGATGTGTATATGCTCATATGTATATCACATAAACCTTTAAGAACTGACTTTTTACTTGCTGCCTATTATATACTGCGCATTGAAAGGtgcctttaaaaataattttccacatcactggttttaatattatgtgtaattgatttgaatgtgtgtgtgtgcatacacaACTGAGCACTTTACTAGGGACACTGTATAAGTGCCATGTAGGGCCTCCATTTGCTCCATCATGAATCCACAGATTCCACAATGTGTTTGGTTGTATTTTCTGTAGATTAATCAGGTGCACATTCatgctgcagcctcagctttctgttcttggctgacagaAGTGGAATTGATCTCTTGTGGGATTGGGTCAACTTCATGACAACATGTTCTTGATTACACCATTCTGAGGAATCTGTTTAGTCGGTTGTCATGACAATTCCTAGAAGAATAGCAGTTCTACACATTTACAAACCAATAGTTTGGTACCAAAATCCCACTACAATTATAATCACtccttttttgttatatttaaatgtttgatgTGAACATTAACTAGAGCTGTTGCCACTtaattaaaaaaggcaaaaaagtgtaacagtgttcctaataaagtgcttAGTGTGTGTCTATTTGTAATGAAGAACTTTGCTCCGTCCAGATCATGTATTATATGACACCTTGAATGCCTTTATAAGACTTTAATCAAatctttaaaatcaatatttgaatgAATATAAAGATGAATAAGAGAAACATATATGATTAGTAGctgtttataaattaaaagtgACATTATTTGCTACTCA

Function

GO: NA

KEGG:

id description
ko00562 Inositol phosphate metabolism
ko00511 Other glycan degradation
ko04144 Endocytosis
ko04142 Lysosome

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250414.3 True 4179 mRNA 0.41 16 16074686 16092755

Neighbor

gene id symbol gene type direction distance location
plppr5 plppr5,LOC107739033,LOC107677304,LOC107712819,LOC107657749 coding downstream 111753 15872997 ~ 15962933 (-)
dpyd dpyd,LOC107677268,LOC107590279,LOC106578501 coding downstream 341810 15525920 ~ 15732876 (-)
f3 NA coding downstream 913940 15154698 ~ 15160746 (-)
LOC103021960 LOC108428923 coding downstream 953798 15112593 ~ 15120888 (-)
cpne3 cpne3,LOC107712810,LOC107657769,LOC107739025,LOC107677279 coding downstream 964238 15094967 ~ 15110448 (-)
ano10 ano10,LOC107751882,LOC107601655,LOC107657579 coding upstream 162220 16254975 ~ 16292970 (-)
cnot10 cnot10 coding upstream 330568 16423323 ~ 16435328 (-)
trak1 trak1,LOC107751889,LOC107723078 coding upstream 400210 16492965 ~ 16558742 (-)
ctnnb1 ctnnb1,LOC107701997,LOC107570993,LOC107748497 coding upstream 587014 16679769 ~ 16691913 (-)
LOC111188204 cpq coding upstream 700925 16793680 ~ 16808249 (-)
G91259 palmd non-coding downstream 2313 16065954 ~ 16072373 (-)
G91243 NA non-coding downstream 112923 15961384 ~ 15961763 (-)
G91210 NA non-coding downstream 316030 15751479 ~ 15758656 (-)
G91206 NA non-coding downstream 555970 15518490 ~ 15518716 (-)
G91192 ptbp2,LOC107677274,LOC108268572,LOC107712817,LOC107590280 non-coding downstream 593434 15477400 ~ 15481252 (-)
G91262 NA non-coding upstream 1510 16094265 ~ 16146828 (-)
G91294 NA non-coding upstream 104991 16197746 ~ 16198355 (-)
G91310 NA non-coding upstream 276404 16369159 ~ 16369443 (-)
G91322 NA non-coding upstream 289834 16382589 ~ 16383175 (-)
G91396 cck non-coding upstream 387286 16480041 ~ 16481408 (-)
G91208 NA other downstream 308254 15759961 ~ 15766432 (-)
G91187 NA other downstream 750589 15323300 ~ 15324097 (-)
LOC103022461 NA other downstream 944580 15124513 ~ 15130106 (-)
G90788 NA other downstream 1815730 14257955 ~ 14258956 (-)
LOC103029309 osbpl3,osbpl3b,LOC108441521,LOC107678127,LOC107550826,LOC107685532 other downstream 2939572 13021995 ~ 13135114 (-)
pomgnt2 pomgnt2,LOC107657577,LOC107732433,LOC107551215,LOC107751881,LOC107704096,LOC107601673 other upstream 82198 16174953 ~ 16191275 (-)
LOC103036883 NA other upstream 656167 16748922 ~ 16761761 (-)
G91479 NA other upstream 993490 17086245 ~ 17089037 (-)
LOC103021736 arid1a other upstream 1487861 17580616 ~ 17624347 (-)
LOC103025608 LOC108434170 other upstream 2269196 18361951 ~ 18366278 (-)

Expression


Co-expression Network