LOC103021960 (LOC108428923)


Basic Information

Item Value
gene id LOC103021960
gene name LOC108428923
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 15112593 ~ 15120888 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250380.3
CAGCGTCAGTTAAACCAGCACAGCGTTCTAAAACCGTTAGGCGGACCAGCAGCTCACAGCCAAAACAACTTTAACTCCGTTAACGTTACACAGGCAGAAACTGTCACAGGTCGGCTAACACAGCTTTATTATACtgtcagaaacagcagcagtggtgtttgtttatatttatctcACTGCGTGTAAAGttaaaaacaCCATGAACTCAAATGGTGGCTCTGGACATTTTCCAAAACAAAGAATGATGGCCGGAAATCAAGATTCTGCCTTTCGACAGGTTACACCAAGAAATGAGATATATGCAAGGGGACAGCTGAATGAACCTTCATCCGATAATTTCATGATCAAGATTGCAGAAGTAGTTGATTCTCCTATTCCTGTTCCAGTATCCAACTACTACAGTGCTAATGCAAGCCGGCTTTTTGGTTTCAACTCAGAGAGCAGCTTCCAGAGTTATCAGATGTTCAATATGTCCCCTTCAGCACCTCAGCACCCTACTACTGCCATTTTTCAGTGCACTGCTCAAGATATAGAACGGGTTCAGCAGTACTACGTGCCAGCCCAagCTCCTCCAAGTAACATGTCAGCGTATCAGATCCATTCACCCAGCTCCAGCCTACCACAGGGTGTAGTGATGACCAGTCCACCCAGCTCCTTACACAGCCCACAACATGTAGCAGAGGAAACCTCACACAAGAGGGAGCTCCGCCTACTGAAAAACAGGTTGGCAGCTAAAGCATCTCGCCGCAAGAGGAGAGAGTATGTACAGGACCTAGAGTCCCGCATCGCAGAACTGGAGTTGGAGAACATGAATCTCACCAATGAGATCAACCATCTGAAGAAATCTCATGCTGTAAATCCAGTTAGGGCTGGTGCAGTGCTACATCTAATCTGAACACTTTCTGCCTCATAGCTTTGCCTCCACAACTTTACTTCTGTTCTAATGTATTTCTGCAGATTGTTAAATATCTAtatttgtgagaaaaaaaaatagataagcACAAGGATGCCTATGCTTACTTACAATTTTGGATGAAATTTCATATGGATTGTTTCTAAATTATTaatgtttacatttaaaatgcatttttcaaactttatgaataaaacTTTGTTAATTATTTGTAGGCAATTTGAGATAACTTGCATGTAATTGTATTTGAAGTAAAGGTTGTCATTAAacatgtatattgtaaaaaacaaTGTATGAGTGTACCTGTACAATGAATTTGAACTCTgggtaaaatatacatatttttgacATTCA
>XM_007250381.2
GTGCAGCGTCAGTTAAACCAGCACAGCGTTCTAAAACCGTTAGGCGGACCAGCAGCTCACAGCCAAAACAACTTTAACTCCGTTAACGTTACACAGGCAGAAACTGTCACAGGTCGGCTAACACAGCTTTATTATACtgtcagaaacagcagcagtggtgtttgtttatatttatctcACTGCGTGTAAAGttaaaaacaCCATGAACTCAAATGGTGGCTCTGGACATTTTCCAAAACAAAGAATGATGGCCGGAAATCAAGATTCTGCCTTTCGACAGGTTACACCAAGAAATGAGATATATGCAAGGGGACAGCTGAATGAACCTTCATCCGATAATTTCATGATCAAGATTGCAGAAGTAGTTGATTCTCCTATTCCTGTTCCAGTATCCAACTACTACAGTGCTAATGCAAGCCGGCTTTTTGGTTTCAACTCAGAGAGCAGCTTCCAGAGTTATCAGATGTTCAATATGTCCCCTTCAGCACCTCAGCACCCTACTACTGCCATTTTTCAGTGCACTGCTCAAGATATAGAACGGGTTCAGCAGTACTACGTGCCAGCCCAagCTCCTCCAAGTAACATGTCAGCGTATCAGATCCATTCACCCAGCTCCAGCCTACCACAGGGTGTAGTGATGACCAGTCCACCCAGCTCCTTACACAGCCCACAACATGTAGCAGAGGAAACCTCACACAAGAGGGAGCTCCGCCTACTGAAAAACAGGGAAGCTGCTCGGGAATGCCGGCGGAAGAAGAAAGAATATGTCAAATGTCTTGAAAATCGGGTTGCTGTGCTCGAAAATCAAAACAAGACGCTTATTGAAGAACTCAGGGCCCTAAAAGACTTGTATTGTCACAAAATTGAATAGTGGAAGGCCACCTTAGGCCAGAAAGAGACTTAAAGGGACTCTGCTGTTCACAGATTTCTGCAAGCATCTGGGCAAAAACCTTTTTTACTTAATGTCTAGCCACTGCTGAAAAAAAGGTCACAGTTGCATCTCCTGTATATCCTAGACTCCTGTGTCCGCACATGTCTGTCTGAGGATGATAGGGAGCTGATTTTCTGCTCTGTTTTGGAGTCAGTAAGTGTGGTATGTTGCCTTTGTTACTTGTGCTTTTTGCAGGTTGGCAGCTAAAGCATCTCGCCGCAAGAGGAGAGAGTATGTACAGGACCTAGAGTCCCGCATCGCAGAACTGGAGTTGGAGAACATGAATCTCACCAATGAGATCAACCATCTGAAGAAATCTCATGCTGTAAATCCAGTTAGGGCTGGTGCAGTGCTACATCTAATCTGAACACTTTCTGCCTCATAGCTTTGCCTCCACAACTTTACTTCTGTTCTAATGTATTTCTGCAGATTGTTAAATATCTAtatttgtgagaaaaaaaaatagataagcACAAGGATGCCTATGCTTACTTACAATTTTGGATGAAATTTCATATGGATTGTTTCTAAATTATTaatgtttacatttaaaatgcatttttcaaactttatgaataaaacTTTGTTAATTATTTGTAGGCAATTTGAGATAACTTGCATGTAATTGTATTTGAAGTAAAGGTTGTCATTAAacatgtatattgtaaaaaacaaTGTATGAGTGTACCTGTACAATGAATTTGAACTCTgggtaaaatatacatatttttgacATTCA
>XM_022673636.1
CGAAACCTAGCTTGCTAAGTTAGCTACCCTAGCTAGTGAACTAATTACTAGCAGTTTATAATAACTTTGGAATTGCTAGCTAATCTGTCAAATAGCTGCGTCCAGTAACAGttaaaaacaCCATGAACTCAAATGGTGGCTCTGGACATTTTCCAAAACAAAGAATGATGGCCGGAAATCAAGATTCTGCCTTTCGACAGGTTACACCAAGAAATGAGATATATGCAAGGGGACAGCTGAATGAACCTTCATCCGATAATTTCATGATCAAGATTGCAGAAGTAGTTGATTCTCCTATTCCTGTTCCAGTATCCAACTACTACAGTGCTAATGCAAGCCGGCTTTTTGGTTTCAACTCAGAGAGCAGCTTCCAGAGTTATCAGATGTTCAATATGTCCCCTTCAGCACCTCAGCACCCTACTACTGCCATTTTTCAGTGCACTGCTCAAGATATAGAACGGGTTCAGCAGTACTACGTGCCAGCCCAagCTCCTCCAAGTAACATGTCAGCGTATCAGATCCATTCACCCAGCTCCAGCCTACCACAGGGTGTAGTGATGACCAGTCCACCCAGCTCCTTACACAGCCCACAACATGTAGCAGAGGAAACCTCACACAAGAGGGAGCTCCGCCTACTGAAAAACAGGTTGGCAGCTAAAGCATCTCGCCGCAAGAGGAGAGAGTATGTACAGGACCTAGAGTCCCGCATCGCAGAACTGGAGTTGGAGAACATGAATCTCACCAATGAGATCAACCATCTGAAGAAATCTCATGCTGTAAATCCAGTTAGGGCTGGTGCAGTGCTACATCTAATCTGAACACTTTCTGCCTCATAGCTTTGCCTCCACAACTTTACTTCTGTTCTAATGTATTTCTGCAGATTGTTAAATATCTAtatttgtgagaaaaaaaaatagataagcACAAGGATGCCTATGCTTACTTACAATTTTGGATGAAATTTCATATGGATTGTTTCTAAATTATTaatgtttacatttaaaatgcatttttcaaactttatgaataaaacTTTGTTAATTATTTGTAGGCAATTTGAGATAACTTGCATGTAATTGTATTTGAAGTAAAGGTTGTCATTAAacatgtatattgtaaaaaacaaTGTATGAGTGTACCTGTACAATGAATTTGAACTCTgggtaaaatatacatatttttgacATTCA
>XM_022673637.1
acatatttttggcTTAATCACATTATAGCTCATAAATGGAAAGagagatgattttttttgtacaagaAAATATTTCTTTGGAGGAGCCTAAACTGCACACATTGTAACTCTAGTAGGCAGGCTAGGAGGAACACTAAACTACATTCTTACATAATTCTAAGCCTTTATCTAAATCATAGCACTGTATCCTACAATGTAGTATCTAAAAAGCTTCTCAAAGCTTCTGCATTCTACAGTGCTGCTTGGCTGATGCAGCTAAGAGAACCCAGCAGCTCACATGCAGTGAGCTTGTGAAAGCAGGAAGAGACGCGAGGAGGCGGGGATGGCTCCGGTCTCCACTGTGTTATTGACATCAGGAGGCTAGTGATGTCATAGTGATGTCAATAGCTTTAATTGTAATTGCACACATAGCTAGTGGTTTGGGCAGCACTGTGTGCTGAAggcagagggagaaagagtcTCTCAGCTCCACTACACATGGCTGTGATTGGAGAGGAGAAAGAGTCagCTCCTCCAAGTAACATGTCAGCGTATCAGATCCATTCACCCAGCTCCAGCCTACCACAGGGTGTAGTGATGACCAGTCCACCCAGCTCCTTACACAGCCCACAACATGTAGCAGAGGAAACCTCACACAAGAGGGAGCTCCGCCTACTGAAAAACAGGGAAGCTGCTCGGGAATGCCGGCGGAAGAAGAAAGAATATGTCAAATGTCTTGAAAATCGGGTTGCTGTGCTCGAAAATCAAAACAAGACGCTTATTGAAGAACTCAGGGCCCTAAAAGACTTGTATTGTCACAAAATTGAATAGTGGAAGGCCACCTTAGGCCAGAAAGAGACTTAAAGGGACTCTGCTGTTCACAGATTTCTGCAAGCATCTGGGCAAAAACCTTTTTTACTTAATGTCTAGCCACTGCTGAAAAAAAGGTCACAGTTGCATCTCCTGTATATCCTAGACTCCTGTGTCCGCACATGTCTGTCTGAGGATGATAGGGAGCTGATTTTCTGCTCTGTTTTGGAGTCAGTAAGTGTGGTATGTTGCCTTTGTTACTTGTGCTTTTTGCAGGTTGGCAGCTAAAGCATCTCGCCGCAAGAGGAGAGAGTATGTACAGGACCTAGAGTCCCGCATCGCAGAACTGGAGTTGGAGAACATGAATCTCACCAATGAGATCAACCATCTGAAGAAATCTCATGCTGTAAATCCAGTTAGGGCTGGTGCAGTGCTACATCTAATCTGAACACTTTCTGCCTCATAGCTTTGCCTCCACAACTTTACTTCTGTTCTAATGTATTTCTGCAGATTGTTAAATATCTAtatttgtgagaaaaaaaaatagataagcACAAGGATGCCTATGCTTACTTACAATTTTGGATGAAATTTCATATGGATTGTTTCTAAATTATTaatgtttacatttaaaatgcatttttcaaactttatgaataaaacTTTGTTAATTATTTGTAGGCAATTTGAGATAACTTGCATGTAATTGTATTTGAAGTAAAGGTTGTCATTAAacatgtatattgtaaaaaacaaTGTATGAGTGTACCTGTACAATGAATTTGAACTCTgggtaaaatatacatatttttgacATTCA

Function

NR:

description
PREDICTED: cAMP-responsive element modulator-like isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250380.3 False 1267 mRNA 0.40 6 15112593 15120885
XM_007250381.2 True 1670 mRNA 0.41 6 15112593 15120888
XM_022673636.1 False 1190 mRNA 0.40 6 15112593 15120287
XM_022673637.1 False 1609 mRNA 0.41 3 15112593 15117747

Neighbor

gene id symbol gene type direction distance location
cpne3 cpne3,LOC107712810,LOC107657769,LOC107739025,LOC107677279 coding downstream 2145 15094967 ~ 15110448 (-)
cnbd1 NA coding downstream 53733 15007236 ~ 15058860 (-)
vim vim,LOC107098299,LOC107732120 coding downstream 591453 14513488 ~ 14521140 (-)
pde1c pde1c coding downstream 622174 14333960 ~ 14490419 (-)
neurod6 neurod6,LOC104940014,LOC100696490,LOC107736131 coding downstream 808210 14300309 ~ 14304383 (-)
f3 NA coding upstream 33810 15154698 ~ 15160746 (-)
dpyd dpyd,LOC107677268,LOC107590279,LOC106578501 coding upstream 405032 15525920 ~ 15732876 (-)
plppr5 plppr5,LOC107739033,LOC107677304,LOC107712819,LOC107657749 coding upstream 752109 15872997 ~ 15962933 (-)
frrs1 NA coding upstream 953798 16074686 ~ 16092755 (-)
ano10 ano10,LOC107751882,LOC107601655,LOC107657579 coding upstream 1134087 16254975 ~ 16292970 (-)
G90993 NA non-coding downstream 106904 15004977 ~ 15005689 (-)
G90907 NA non-coding downstream 472111 14640088 ~ 14640482 (-)
G90878 trdmt1 non-coding downstream 579315 14530632 ~ 14533278 (-)
G90869 NA non-coding downstream 689547 14419598 ~ 14423046 (-)
G90868 NA non-coding downstream 693078 14418768 ~ 14419515 (-)
G91037 NA non-coding upstream 947 15121835 ~ 15123344 (-)
G91168 NA non-coding upstream 82497 15203385 ~ 15205817 (-)
G91169 cnn3,cnn3a,LOC108269615,LOC108428967,LOC107657766,LOC107739018 non-coding upstream 101928 15222816 ~ 15232542 (-)
G91176 NA non-coding upstream 114201 15235089 ~ 15236004 (-)
G91178 tmem56a,LOC103024964,LOC108428968,LOC107677262,LOC107578871,LOC107712816 non-coding upstream 127715 15248603 ~ 15274899 (-)
G90788 NA other downstream 853637 14257955 ~ 14258956 (-)
LOC103029309 osbpl3,osbpl3b,LOC108441521,LOC107678127,LOC107550826,LOC107685532 other downstream 1977479 13021995 ~ 13135114 (-)
G90571 mpp6,LOC108267518,LOC108436535,LOC107596657,LOC107749029 other downstream 2145302 12950612 ~ 12967291 (-)
LOC103038102 iqgap3,LOC106605450,LOC105031059,LOC105908924 other downstream 2369376 12720969 ~ 12743217 (-)
LOC103024123 LOC108436541 other downstream 2942899 12162288 ~ 12169694 (-)
LOC103022461 NA other upstream 3625 15124513 ~ 15130106 (-)
G91187 NA other upstream 202412 15323300 ~ 15324097 (-)
G91208 NA other upstream 639073 15759961 ~ 15766432 (-)
pomgnt2 pomgnt2,LOC107657577,LOC107732433,LOC107551215,LOC107751881,LOC107704096,LOC107601673 other upstream 1054065 16174953 ~ 16191275 (-)
LOC103036883 NA other upstream 1628034 16748922 ~ 16761761 (-)

Expression


Co-expression Network