LOC111193312


Basic Information

Item Value
gene id LOC111193312
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 2845019 ~ 2869567 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650417.1
ccctcgtctgagaccaAGCCACGCCCACCCCGCAAAATTCAAGCGCTTCTGAAACAGGGCGGAAAGAGGTTACTCCACACAGCGGCAGCAAACATCAAGGCTCATCAGACCAGACTGGAGTGTCAGCGTTCCGTTTTTGGCTGCCAGAATTCGAACCCGAAATGGTCTTCTGAAGTTCAATTACCTCAGGACAGGCTGTGCTGTGCATTCTGAGGTCCAGTTTCCAATGCTGCGCTTCTACAGAAGATTAACAGccgcAGGTCCAACAGATCTCCTGTCCTGGTGTCTTGTATTTACAGTAGCCGTCAGAACAACAAAGACACATGTGGAAAGTGAAAAGCTCCCCCCCTCCCCATGGTTGGGGTGGAGCTCTAAGCAGACGTTTGTCCTCCCAGGAAGAAGAGGCTTTCGTGGACAGTCTCTGTCTGTTGCTGTGCAGTTCATCAGTTGCCTCTGCTGTTAGGAAATGATGGCGGGAGACCACCGCACCACTGTCAGATTGTCCGCACTCACCGAACGCTTCTTCGTTGCTTTTTTCAAGTCTTTATACTTGTCGTCACAGAGCCTGGAAATAGCCTGTGTGCCAGAGAAACAAAGATGTTGTGTTATGTTTACTTTTAATACACTCTCTCACAATATATAACCTCACAGCTTTTACAGGTCGCCATTCCCAAGGGGTTACACTGCTTAGAGTTTATTTAATGTGAATTACCTAAGCCTGGAATGGAAGGTCATAGGGTTGGGGTCTATGCTTTATGCAGCAGGCACCACACTCCATAACAGTTATATGGTGCGTAGATTTTGGAATAACCTTACAGTGAGGCACCAGCATTGCACAAAGCATCTAAATGGCATTAATGCCTaatttgaaaacaaaaacattcaCATTTTATGTAAAGGTATTAGTAACAATAATAATGGTAgcagtaaatgtattttaaagtaatcATGTGAATTCAGCTATAaattgtttactgtgttttcttgcatttttttctttcctttatcCCCAAACTAGGCTACTAATGCAATCTGAGGAAAGCGCCAGATCCCAGGCACCAAGATGAGAGGAAAGGCCAGAGATAAAAAGCCTACTCATTTGTGAGATCTTTGATTTTCTACAATTCGGCCCAGGGGGATCAGATGCGGTGTATCAGCAGGATTCACCAGGGAAAGAAGAAGTGGCAATGGCAGATCAGACAAGAGGAGTCCAAAGCCAGgttgctaaccacagtgctgaGGCCTCAGGATGGCCCTCGCTGACACTTATTGTCCTGAGTGTGCCACAGACCTACAGAAAACAACTGCAGTACACCAACCAACTCCAGCAACCAGGCCAGAGAACAGAGAGGAACTGTGAGAGGAGGTGAGGAAGAAGTGGACCAACTTCTTCAAACCCCTTCAAGCATGCAGGGGACAAGTGAGGCAGGAAGCTGTAGATCACAATCTAAGCTGGACATCTTCAGGGAAAACAGTACAGAGACCCAGCAAAGTCAACTCCAGTGCGATCACCAGGTTATATTCCACTCCAGGCCACTCCCTTCCGTTCTACTGGATGCACTGGAGCAGAGTGTCAGAAGCCACCAAAGAACTGGCTTAGGAGGCAGAAAAGGGCAGTTATTTGCTGTGACTAAGGCCAGCAGGGGGTGACtgctttatatact
>XR_002650418.1
ccctcgtctgagaccaAGCCACGCCCACCCCGCAAAATTCAAGCGCTTCTGAAACAGGGCGGAAAGAGGTTACTCCACACAGCGGCAGCAAACATCAAGGCTCATCAGACCAGACTGGAGTGTCAGCGTTCCGTTTTTGGCTGCCAGAATTCGAACCCGAAATGGTCTTCTGAAGTTCAATTACCTCAGGACAGGCTGTGCTGTGCATTCTGAGGTCCAGTTTCCAATGCTGCGCTTCTACAGAAGATTAACAGccgcAGGTCCAACAGATCTCCTGTCCTGGTGTCTTGTATTTACAGTAGCCGTCAGAACAACAAAGACACATGTGGAAAGTGAAAAGCTCCCCCCCTCCCCATGGTTGGGGTGGAGCTCTAAGCAGACGTTTGTCCTCCCAGGAAGAAGAGGCTTTCGTGGACAGTCTCTGTCTGTTGCTGTGCAGTTCATCAGTTGCCTCTGCTGTTAGGAAATGATGGCGGGAGACCACCGCACCACTGTCAGATTGTCCGCACTCACCGAACGCTTCTTCGTTGCTTTTTTCAAGTCTTTATACTTGTCGTCACAGAGCCTGGAAATAGCCTGTGTGCCAGAGAAACAAAGATGTTGTGCTACTAATGCAATCTGAGGAAAGCGCCAGATCCCAGGCACCAAGATGAGAGGAAAGGCCAGAGATAAAAAGCCTACTCATTTGTGAGATCTTTGATTTTCTACAATTCGGCCCAGGGGGATCAGATGCGGTGTATCAGCAGGATTCACCAGGGAAAGAAGAAGTGGCAATGGCAGATCAGACAAGAGGAGTCCAAAGCCAGgttgctaaccacagtgctgaGGCCTCAGGATGGCCCTCGCTGACACTTATTGTCCTGAGTGTGCCACAGACCTACAGAAAACAACTGCAGTACACCAACCAACTCCAGCAACCAGGCCAGAGAACAGAGAGGAACTGTGAGAGGAGGTGAGGAAGAAGTGGACCAACTTCTTCAAACCCCTTCAAGCATGCAGGGGACAAGTGAGGCAGGAAGCTGTAGATCACAATCTAAGCTGGACATCTTCAGGGAAAACAGTACAGAGACCCAGCAAAGTCAACTCCAGTGCGATCACCAGGTTATATTCCACTCCAGGCCACTCCCTTCCGTTCTACTGGATGCACTGGAGCAGAGTGTCAGAAGCCACCAAAGAACTGGCTTAGGAGGCAGAAAAGGGCAGTTATTTGCTGTGACTAAGGCCAGCAGGGGGTGACtgctttatatact
>XR_002650419.1
ccctcgtctgagaccaAGCCACGCCCACCCCGCAAAATTCAAGCGCTTCTGAAACAGGGCGGAAAGAGGTTACTCCACACAGCGGCAGCAAACATCAAGGCTCATCAGACCAGACTGGAGTGTCAGCGTTCCGTTTTTGGCTGCCAGAATTCGAACCCGAAATGGTCTTCTGAAGTTCAATTACCTCAGGACAGGCTGTGCTGTGCATTCTGAGGTCCAGTTTCCAATGCTGCGCTTCTACAGAAGATTAACAGGCTACTAATGCAATCTGAGGAAAGCGCCAGATCCCAGGCACCAAGATGAGAGGAAAGGCCAGAGATAAAAAGCCTACTCATTTGTGAGATCTTTGATTTTCTACAATTCGGCCCAGGGGGATCAGATGCGGTGTATCAGCAGGATTCACCAGGGAAAGAAGAAGTGGCAATGGCAGATCAGACAAGAGGAGTCCAAAGCCAGgttgctaaccacagtgctgaGGCCTCAGGATGGCCCTCGCTGACACTTATTGTCCTGAGTGTGCCACAGACCTACAGAAAACAACTGCAGTACACCAACCAACTCCAGCAACCAGGCCAGAGAACAGAGAGGAACTGTGAGAGGAGGTGAGGAAGAAGTGGACCAACTTCTTCAAACCCCTTCAAGCATGCAGGGGACAAGTGAGGCAGGAAGCTGTAGATCACAATCTAAGCTGGACATCTTCAGGGAAAACAGTACAGAGACCCAGCAAAGTCAACTCCAGTGCGATCACCAGGTTATATTCCACTCCAGGCCACTCCCTTCCGTTCTACTGGATGCACTGGAGCAGAGTGTCAGAAGCCACCAAAGAACTGGCTTAGGAGGCAGAAAAGGGCAGTTATTTGCTGTGACTAAGGCCAGCAGGGGGTGACtgctttatatact

Function

GO: NA

KEGG:

id description
ko04320 Dorso-ventral axis formation

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650417.1 True 1664 lncRNA 0.47 5 2845019 2869567
XR_002650418.1 False 1250 lncRNA 0.51 6 2845019 2869567
XR_002650419.1 False 900 lncRNA 0.51 5 2845019 2869567

Neighbor

gene id symbol gene type direction distance location
klf6 klf6,LOC101473487,LOC105019438,LOC102789845 coding downstream 368607 2468182 ~ 2476412 (-)
adarb2 adarb2,LOC107713870,LOC107734387 coding downstream 873376 1639731 ~ 1971643 (-)
idi1 idi1 coding downstream 1289252 1550735 ~ 1555767 (-)
LOC103026733 slc35g2,slc35g2b,LOC103026733,LOC107588046,LOC107687509,LOC107683493,LOC107714021 coding downstream 1398936 1438926 ~ 1446083 (-)
nck1 nck1,nck1b,LOC107600141,LOC107683484,LOC107713805,LOC107734380,LOC107588047 coding downstream 1413554 1340846 ~ 1431465 (-)
fzd8 fzd8,fzd8a,LOC107739125,LOC107717597 coding upstream 4667 2874234 ~ 2877112 (-)
eci2 eci2,zgc:92030,LOC107713764 coding upstream 541259 3410826 ~ 3425018 (-)
c10h18orf63 NA coding upstream 667495 3537062 ~ 3571119 (-)
nrn1 nrn1,nrn1a,LOC107713755,LOC107734388 coding upstream 1130803 4000370 ~ 4009739 (-)
f13a1 NA coding upstream 1153444 4023011 ~ 4047235 (-)
G88106 NA non-coding downstream 345255 2494541 ~ 2499764 (-)
G88055 pfkp non-coding downstream 574873 2266452 ~ 2270146 (-)
G88042 NA non-coding downstream 617797 2225670 ~ 2227222 (-)
G88029 NA non-coding downstream 715088 2106418 ~ 2129931 (-)
G88023 NA non-coding downstream 746328 2098469 ~ 2098691 (-)
LOC111193313 NA non-coding upstream 127551 2997118 ~ 3150100 (-)
G88218 NA non-coding upstream 280062 3149629 ~ 3152006 (-)
G88238 NA non-coding upstream 390488 3260055 ~ 3292471 (-)
G88351 fam69c non-coding upstream 634035 3503602 ~ 3584174 (-)
G88385 NA non-coding upstream 1030928 3900495 ~ 3901629 (-)
G88044 pfkp,LOC101472402,LOC102201923,LOC100702375,LOC102790125 other downstream 557780 2275608 ~ 2287239 (-)
G87802 zic1 other downstream 1879942 960006 ~ 965077 (-)
LOC103033691 LOC108431537,LOC108266640,LOC107600138,LOC107713778,LOC107687503,LOC107683489,LOC107734392 other upstream 466990 3336557 ~ 3353875 (-)
lyrm4 lyrm4 other upstream 736863 3606430 ~ 3691548 (-)
G88458 NA other upstream 1696283 4565850 ~ 4566204 (-)
G88465 NA other upstream 1725491 4595058 ~ 4595325 (-)
vstm2a vstm2a other upstream 3806708 6676275 ~ 6732664 (-)

Expression


Co-expression Network