LOC103041119


Basic Information

Item Value
gene id LOC103041119
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172441.1
NCBI id APWO02002039.1
chromosome length 306493
location 238774 ~ 239350 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>LOC103041119
ACtgaattttcacattttaatccATCAAAAAGTTTCATTATGGGGCTAAATATTGCATTTCAGTACTGCATTCTTTTACTGATGCTAACACAAGatATTATAAATGCTGAGATCAGACTTGAGCAGTCTTCTGCTGTGGTGAAGAAACCTGGAGAAACTGTGAAGATCTCCTGTAAAATCAGTGGATTTACAATGACCAGCGCTTATATGCACTGGATACGACAGAAACCAGGACAAGCTCTGGAGTGGATTGGGAGAGTAAACTCTGGCAGTAGCTCTGATATTAAATATGCAGATTCCATGAAAGATCACTTTGTACTGACTGAGGACGTTCCTTCAGAAACACAGTTCTTAGAGGCCAAGAGTCTGAGAGCAGAAGATACTGCTGTTTATTACTGCGCTCGAAGAGACACAGTGACTGAAGCTGATGAAGCAGCTGTACAAAAACCAACCCACCCCCCACATACAGGTACATGTATACACTGA

Function

GO:

id name namespace
GO:0008237 metallopeptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC103041119 True 486 V_segment 0.41 2 238774 239350

Neighbor

gene id symbol gene type direction distance location
LOC111190154 NA coding upstream 2196 233812 ~ 236578 (+)
LOC107197483 NA coding upstream 222633 15658 ~ 16141 (+)
LOC103040202 NA coding downstream 998 240348 ~ 244545 (+)
LOC111190155 NA coding downstream 7230 246580 ~ 258409 (+)
LOC111190159 NA coding downstream 46709 286059 ~ 287629 (+)
LOC111190133 NA coding downstream 49229 288579 ~ 289221 (+)
LOC111190160 NA coding downstream 50983 290333 ~ 290884 (+)
G280334 NA non-coding upstream 30919 207574 ~ 207855 (+)
G280298 NA non-coding upstream 199106 38119 ~ 39668 (+)
G280297 NA non-coding upstream 201118 36371 ~ 37656 (+)
G280290 NA non-coding upstream 207241 22417 ~ 31533 (+)
G280338 NA non-coding downstream 1004 240354 ~ 249052 (+)
G280345 NA non-coding downstream 13313 252663 ~ 254221 (+)
LOC111190165 NA non-coding downstream 21527 260877 ~ 261488 (+)
LOC111190156 NA non-coding downstream 28335 267685 ~ 268169 (+)
LOC103040519 NA non-coding downstream 30958 270308 ~ 270906 (+)
LOC103040825 NA other upstream 6871 231279 ~ 231903 (+)
LOC103039884 LOC108275153 other upstream 9653 228575 ~ 229121 (+)
LOC111190153 NA other upstream 16820 221495 ~ 221954 (+)
LOC111190135 NA other upstream 22202 215934 ~ 216572 (+)
LOC111190134 NA other upstream 35909 202319 ~ 202865 (+)
LOC111190157 NA other downstream 32970 272320 ~ 276225 (+)
LOC111190162 NA other downstream 42925 282275 ~ 282898 (+)
G280341 NA other downstream 45092 284442 ~ 286535 (+)
LOC111190158 NA other downstream 45113 284463 ~ 285888 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) LOC117598793 NA misc NC_047607.1 CM018553.1 21932317 ~ 21932768 (-)