G45970


Basic Information

Item Value
gene id G45970
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 8039680 ~ 8039949 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU52280
GATATTTTCAAACAATGCTAACAGGCTGATATCTAGCTAGCTAGTTAGTTAGCTTGCTAGCTAGCTAACAAAAGGACAATCAAACATTTTATATTTAGTAAAAGTTTTTAAAATATTACAACATTTTCCATGTTTTATAGCAGTTGTACCAAATGACCTGATGTTTCGGGACATGCATATGAGCAAGTGAAAACACAAATTTTTCAAATAGTTAAGAGAGATTTAGTTACTTTGCTTCATGACCATGTGGTCCTTTGCAGGTGTCTGAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52280 True 270 lncRNA 0.33 1 8039680 8039949

Neighbor

gene id symbol gene type direction distance location
CI01000006_08020880_08024499 FAM175A coding downstream 15181 8020697 ~ 8024499 (-)
CI01000006_08009529_08018597 HELQ coding downstream 21083 8009529 ~ 8018597 (-)
CI01000006_08002867_08008150 HPSE coding downstream 31480 8002622 ~ 8008200 (-)
CI01000006_07997158_07999906 NA coding downstream 39567 7995424 ~ 8000113 (-)
CI01000006_07960990_07974726 AMACR coding downstream 64057 7960960 ~ 7975623 (-)
CI01000006_08080632_08085336 NA coding upstream 40444 8080393 ~ 8085863 (-)
CI01000006_08149223_08150992 NKX6.1, NKX6-1 coding upstream 108544 8148493 ~ 8150992 (-)
CI01000006_08153453_08156753 RPL17P7, RPL17P6, RL17, RPL17.L, RPL17.S, RPL17, RPL17-C18ORF32, RPL17-PS9 coding upstream 113493 8153442 ~ 8157606 (-)
CI01000006_08194421_08196816 NA coding upstream 154182 8194131 ~ 8196885 (-)
CI01000006_08207762_08211601 CRKL coding upstream 166722 8206671 ~ 8212202 (-)
G45960 NA non-coding downstream 108986 7930402 ~ 7930694 (-)
G45928 NA non-coding downstream 207084 7831145 ~ 7832596 (-)
G45903 NA non-coding downstream 236931 7802534 ~ 7802749 (-)
G45902 NA non-coding downstream 239559 7799869 ~ 7800121 (-)
G45868 NA non-coding downstream 243056 7791970 ~ 7796624 (-)
G45985 NA non-coding upstream 39519 8079468 ~ 8079696 (-)
G45986 NA non-coding upstream 40069 8080018 ~ 8080256 (-)
G46018 NA non-coding upstream 158283 8198232 ~ 8276329 (-)
G46106 NA non-coding upstream 369013 8408962 ~ 8835381 (-)
G46089 NA non-coding upstream 441300 8481249 ~ 8498802 (-)
CI01000006_07500281_07507754 NA other downstream 528724 7500246 ~ 7507976 (-)
CI01000006_06974359_06976736 NA other downstream 1062808 6973224 ~ 6976872 (-)
CI01000006_04560607_04560993 NA other downstream 3477612 4559509 ~ 4562068 (-)
G43549 NA other downstream 3684252 4352510 ~ 4355428 (-)
G43102 NA other downstream 5105696 2908451 ~ 2933984 (-)
CI01000006_10453630_10483241 NA other upstream 2442907 10453613 ~ 10484006 (-)
G47658 NA other upstream 2990962 11030911 ~ 11033127 (-)
CI01000006_11651067_11653761 SMD3, SNRPD3, SNRPD3L, MGC52856 other upstream 3610414 11650363 ~ 11654424 (-)
CI01000006_12348300_12348961 GLRX other upstream 4294460 12347180 ~ 12349383 (-)
CI01000006_12569291_12581457 CELL, CEL.2, CEL.1 other upstream 4310810 12569205 ~ 12582487 (-)

Expression


Co-expression Network