G40997 (lsg1,LOC107736209)


Basic Information

Item Value
gene id G40997
gene name lsg1,LOC107736209
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 8364656 ~ 8370402 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU55183
GTGCTTAGTGTGTCCAGGTGTAGCCGATACTGACACCTTCTTATTCTGGAAGATGGTGTTGATAGTGGAGCTTTTGCCAACATTAGGATAACCAACCAGTCCGACGGTCAGCTGTCCCTCCTTGCATGTGGGTCCAGAATGTGCAGATTTAAACATTTCCAGCAGCTCGTCTTTGTGCAGCAGACGGCTGGAGTTATAAAACGAAGATGATTTGCGTGCTCCTTCCTCTCCTTCGTCTCCTGACGCCTCTGAGCAGGTCTGCCAGTCTGCTTCTGAGGTACAGTCCTCAAAAATCTCCTCTATACtctcttcttcatcatcatcctcctcctcctcttccttctcattattgtttttcatttcCTTTTCGTTACTATTCGTCGCTGATCCTTCAGTTTCACTGTAGCTGACTGAAGCTTCTGGATCACTCATCTCCTCATCCTCAACCACATCTTCTCCCTTTTCTTCAGCCTCCAGTCGGGCTGCCTCAGCCAGAGCGGACCAGAACACGGCTCTGATACCTTCTTTCTGGAAGTACCTGGCCCAGGTCCGTCGCTGTTCTCGAGTGAGGAGATCagctttatttaaaagcagcatGTTAACCTTCTGACCGGACACCTCTTTTACATATTTCTCTAGATCTGGACAGCGAAACAGAAGAGGGTTTCTGGCATCAAGAATCTGAACCACGACATCACTTCTCTCAATGACTCTCCAGAGCTGCCTCCAAAAATCCAAGTTCCTCTCAAAAGGTGTAAGAATCAACTTCTGTTCCTCCTCCAGCCTCGCCAAATCTCGTCTCCATGTGAGGAAAGTGTCTCTTTCAGTCTGCTGGAGAACCTCGGGGCTCGTA

Function

symbol description
lsg1 Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in ribosomal subunit export from nucleus. Predicted to act upstream of or within protein transport. Predicted to be located in Cajal body and endoplasmic reticulum. Predicted to be active in cytosol. Is expressed in eye; immature eye; midbrain; neural plate; and segmental plate. Orthologous to human LSG1 (large 60S subunit nuclear export GTPase 1).

NR:

description
PREDICTED: large subunit GTPase 1 homolog, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55183 True 853 lncRNA 0.48 6 8364656 8370402

Neighbor

gene id symbol gene type direction distance location
LOC111192501 NA coding downstream 2183559 6168759 ~ 6181097 (-)
LOC103034882 LOC108439930 coding downstream 2349954 5873377 ~ 6014702 (-)
trnal-uag_2 NA coding downstream 2507380 5857195 ~ 5857276 (-)
aldh1a3 aldh1a3,LOC106562593,LOC107553814,LOC107662254,LOC107755645,LOC107742307,LOC107692006 coding downstream 2724178 5603311 ~ 5640478 (-)
lrrk1 lrrk1,LOC107691986,LOC106593346 coding downstream 2774108 5448862 ~ 5590548 (-)
LOC103027404 NA coding upstream 396728 8767130 ~ 8773967 (-)
LOC103027111 LOC108439438 coding upstream 408629 8779031 ~ 8789891 (-)
LOC103026828 NA coding upstream 421595 8791997 ~ 8798952 (-)
LOC103026545 NA coding upstream 441281 8811683 ~ 8823738 (-)
ncbp2 ncbp2 coding upstream 566903 8937305 ~ 8942121 (-)
G40996 lsg1,LOC107551801,LOC107573872,LOC107685959 non-coding downstream 235 8361849 ~ 8364421 (-)
G40953 NA non-coding downstream 198165 8166147 ~ 8166491 (-)
G40951 NA non-coding downstream 198995 8165392 ~ 8165661 (-)
G40948 NA non-coding downstream 200629 8163792 ~ 8164027 (-)
G40939 NA non-coding downstream 291568 8071090 ~ 8073088 (-)
G41001 NA non-coding upstream 5682 8376084 ~ 8377950 (-)
G41012 NA non-coding upstream 84877 8455279 ~ 8455709 (-)
G41016 NA non-coding upstream 105103 8475505 ~ 8475784 (-)
G41023 NA non-coding upstream 128883 8499285 ~ 8502764 (-)
G41015 NA non-coding upstream 132432 8502834 ~ 8504270 (-)
G40959 NA other downstream 129960 8234107 ~ 8234696 (-)
LOC103030262 diaph3,LOC108428456,LOC108271281,LOC107741707 other downstream 277470 7514543 ~ 8087186 (-)
G40751 NA other downstream 1890582 6471432 ~ 6474074 (-)
G40696 NA other downstream 2272321 6091811 ~ 6092335 (-)
asb7 asb7,LOC107755647,LOC107662256,LOC107742335,LOC102792420 other downstream 2656196 5694424 ~ 5708460 (-)
G41052 col6a1,LOC102785632 other upstream 205449 8575851 ~ 8624441 (-)
G41071 col6a2 other upstream 327511 8697913 ~ 8740282 (-)
LOC103022371 b3g5a,LOC108439423 other upstream 741676 9112078 ~ 9122428 (-)
G41514 fth1,LOC103039853,LOC100692258,LOC104919244,LOC103365615,LOC105892494,LOC101464185,LOC100304657,LOC100528068 other upstream 1575803 9946205 ~ 9953351 (-)
G41522 NA other upstream 1592213 9962615 ~ 9963962 (-)

Expression


Co-expression Network