LOC103027404


Basic Information

Item Value
gene id LOC103027404
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 8767130 ~ 8773967 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022669543.1
GGGTGAAAGTTCAAGGTTTGCAGCGTGACAAGAACTGTAGACATATTTGTGTCTTCTCCATCTGCTCAGCTTCAGATAAAGGAGATTTACTGAGGAAAATGATGAGAATTATTCTAGTTTTAGTCGTAAGCTTGTTTTTGCAGAATGGCAGAGCCACACctgaagcagcagcagggtGTTCAGACCCGGCTATGGTGAGGGCAGCTGAGGAGGCTTTAGATCAAATCAACGACCACAGAGACGAGGGATACGTCTTCTCCCTGAACAGACTGTATGATGTCAGGCAGGAGGCAAAGGAGGGCGGTGTAGAAATGGTAACGCTGATGATAGATGTGCTGGAGACAAaatgtcacgtgatcagcagaaGGAAATGGAAGTCATGTGAAGTAAAGGAAGTTGGGGATGTGCCGGTTTTTGGAAAGTGTGAAGCATCCATCAGCATTCAAACCACTCTTACCCTGCATAACTTTAACTGCACAATCCAGCAAGttcCTGCTGTTGCCATTGTTGAAGCATGTCCAGACTGTCCGACAGCAGAGCGGCTGAATGAACCGATTATAATCGAGACGGCAAATCTTTCCCTACAGAAATTCAACAAAGAGACGAATCTGCCCAATCTCTTCACCCTCCTCAACATAACATCAGCTAGCATGCAGtgggtTGTTGGGCCAGCTTATTTTGTGGAATTCACCATCCAGGAGACAGACTGTGCCAAAGCCTCAACCGACGTTGATTTTTCTCAGTGTCGCCTGAAAAACGGTGCATCTCAGAAAGGCTTTTGTTCCGGCTCTCATACTACCACTGATGATGGCCCTGAGATAAAGATCCCCATAGAGGTCAACTGTTCCATCTATAAACAAACATCTGAAGATGAGAAGGAGAAATCCAAGGATGCAGCAAATCACAGAACAACTGATAAAACCCCAACCACCCAAACCCCCACCGGATCAGTACAGATTCTGCCCCCTCCACCCGTCCCAATCCCACCCAGAGCCATGGCTACCGCCAAAAACTGCCCAGGAAAAAGAGGACACAACCTCGGACTGAGAACAGTGAAGCTGTGAGCTAACTGAGTGTTAAAAGTGTAGTCTGGATGTCGAAAAGCACTGTATCCACTGTCATATCGcttaaagaataataaaagtttgtaTAGTTGTATTTGAAA

Function

GO:

id name namespace
GO:0080090 regulation of primary metabolic process biological_process
GO:0008152 metabolic process biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0030162 regulation of proteolysis biological_process
GO:0001775 cell activation biological_process
GO:0030168 platelet activation biological_process
GO:0051246 regulation of protein metabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process

KEGG:

id description
ko00380 Tryptophan metabolism
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022669543.1 True 1165 mRNA 0.46 8 8767130 8773967

Neighbor

gene id symbol gene type direction distance location
LOC111192501 NA coding downstream 2586033 6168759 ~ 6181097 (-)
LOC103034882 LOC108439930 coding downstream 2752428 5873377 ~ 6014702 (-)
trnal-uag_2 NA coding downstream 2909854 5857195 ~ 5857276 (-)
aldh1a3 aldh1a3,LOC106562593,LOC107553814,LOC107662254,LOC107755645,LOC107742307,LOC107692006 coding downstream 3126652 5603311 ~ 5640478 (-)
lrrk1 lrrk1,LOC107691986,LOC106593346 coding downstream 3176582 5448862 ~ 5590548 (-)
LOC103027111 LOC108439438 coding upstream 5064 8779031 ~ 8789891 (-)
LOC103026828 NA coding upstream 18030 8791997 ~ 8798952 (-)
LOC103026545 NA coding upstream 37716 8811683 ~ 8823738 (-)
ncbp2 ncbp2 coding upstream 163338 8937305 ~ 8942121 (-)
hyls1 NA coding upstream 1205614 9979581 ~ 9993252 (-)
G41078 LOC108428455,LOC107691275,LOC107572144,LOC107751106 non-coding downstream 2599 8761524 ~ 8764531 (-)
G41072 zgc:162816,LOC108428454,LOC107691276,LOC107737263,LOC107751108,LOC105896624 non-coding downstream 48260 8704284 ~ 8718870 (-)
G41065 col6a2,LOC107685953,LOC107718216,LOC107551805 non-coding downstream 77807 8686636 ~ 8689323 (-)
G41028 NA non-coding downstream 244935 8521286 ~ 8522195 (-)
G41025 NA non-coding downstream 249005 8517714 ~ 8518125 (-)
G41085 NA non-coding upstream 16955 8790922 ~ 8802683 (-)
G41148 NA non-coding upstream 147601 8921568 ~ 8921815 (-)
G41154 NA non-coding upstream 154495 8928462 ~ 8935377 (-)
G41176 NA non-coding upstream 249617 9023584 ~ 9080992 (-)
G41179 NA non-coding upstream 264227 9038194 ~ 9059384 (-)
G41071 col6a2 other downstream 26848 8697913 ~ 8740282 (-)
G41052 col6a1,LOC102785632 other downstream 142689 8575851 ~ 8624441 (-)
fam43a fam43a,LOC106573864 other downstream 340035 8355999 ~ 8427095 (-)
G40959 NA other downstream 532434 8234107 ~ 8234696 (-)
LOC103030262 diaph3,LOC108428456,LOC108271281,LOC107741707 other downstream 679944 7514543 ~ 8087186 (-)
LOC103022371 b3g5a,LOC108439423 other upstream 338111 9112078 ~ 9122428 (-)
G41514 fth1,LOC103039853,LOC100692258,LOC104919244,LOC103365615,LOC105892494,LOC101464185,LOC100304657,LOC100528068 other upstream 1172238 9946205 ~ 9953351 (-)
G41522 NA other upstream 1188648 9962615 ~ 9963962 (-)
G41543 NA other upstream 1389493 10163460 ~ 10225826 (-)
G41551 NA other upstream 1496369 10270336 ~ 10270820 (-)

Expression


Co-expression Network