G41065 (col6a2,LOC107685953,LOC107718216,LOC107551805)


Basic Information

Item Value
gene id G41065
gene name col6a2,LOC107685953,LOC107718216,LOC107551805
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 8686636 ~ 8689323 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU55277
CTGGGCACAGCACCGTCTCAATTCGATCTATGAATTCCTCTGCCACCAGGTCGGCGAAGCGCCTCATGCCCAGCACTCCTCCCTCCTTCTGGCAGGCGATGGACTTCAGACTCTCGTTCTCCTCCACCTGGTCGAACATGTCTCCGATCCCGATGGCGTTCACATCTATGCTGTTATCAGTGCAGAGGTAGGTGAGCAGGGAGTCGTCGTCTCGCGGGTCGAAGCGACCGTCGGTGATGACCACCACGGTTACTTTAGCCTTGCTGCGGCGACTGTCGCGGATCATGTTGTCGTAGGCGAATTTCAGAGCGGATGGAGTCCATGTGCCTCCAGCGATCCACTCCAGCTTCTTCACAGCGTCTTTAAAAGCTGACAGGGAATCGATCTTGGTGTCGTTTAGGCTGATGGCCTGGAAAGTGCCACTGTGACTGTACTGGACCACGCCAACACGGGTTCCGGTCTCTGAGTTGGGGTCTTTAGCGATTGAGCCCAGTCTGTTGATGGTGTTGATGACGAAGTTCTTCTCCAGGGTAAAGTTGGTTAATCCCACACTTTCTGAGCTGTCAATCACAAATACAATATCCAGGGCTCCACACCTCTTCTCACAGTCTGAAACAGACAAGAGATAATATAGCAGATATAAGATTAAGCAGAAGTGAGCTAGAGAAATATAATAGGacatattttag

Function

symbol description
col6a2 Acts upstream of or within axonogenesis; muscle cell development; and muscle organ development. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Is expressed in several structures, including anterior segment eye; gut; integument; musculature system; and yolk syncytial layer. Human ortholog(s) of this gene implicated in Ullrich congenital muscular dystrophy. Orthologous to human COL6A2 (collagen type VI alpha 2 chain).

NR:

description
PREDICTED: collagen alpha-2(VI) chain isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55277 True 689 lncRNA 0.51 2 8686636 8689323

Neighbor

gene id symbol gene type direction distance location
LOC111192501 NA coding downstream 2505539 6168759 ~ 6181097 (-)
LOC103034882 LOC108439930 coding downstream 2671934 5873377 ~ 6014702 (-)
trnal-uag_2 NA coding downstream 2829360 5857195 ~ 5857276 (-)
aldh1a3 aldh1a3,LOC106562593,LOC107553814,LOC107662254,LOC107755645,LOC107742307,LOC107692006 coding downstream 3046158 5603311 ~ 5640478 (-)
lrrk1 lrrk1,LOC107691986,LOC106593346 coding downstream 3096088 5448862 ~ 5590548 (-)
LOC103027404 NA coding upstream 77807 8767130 ~ 8773967 (-)
LOC103027111 LOC108439438 coding upstream 89708 8779031 ~ 8789891 (-)
LOC103026828 NA coding upstream 102674 8791997 ~ 8798952 (-)
LOC103026545 NA coding upstream 122360 8811683 ~ 8823738 (-)
ncbp2 ncbp2 coding upstream 247982 8937305 ~ 8942121 (-)
G41028 NA non-coding downstream 164441 8521286 ~ 8522195 (-)
G41025 NA non-coding downstream 168511 8517714 ~ 8518125 (-)
G41014 NA non-coding downstream 174912 8505866 ~ 8511724 (-)
G41015 NA non-coding downstream 182366 8502834 ~ 8504270 (-)
G41023 NA non-coding downstream 183872 8499285 ~ 8502764 (-)
G41072 zgc:162816,LOC108428454,LOC107691276,LOC107737263,LOC107751108,LOC105896624 non-coding upstream 14961 8704284 ~ 8718870 (-)
G41078 LOC108428455,LOC107691275,LOC107572144,LOC107751106 non-coding upstream 72201 8761524 ~ 8764531 (-)
G41085 NA non-coding upstream 101599 8790922 ~ 8802683 (-)
G41148 NA non-coding upstream 232245 8921568 ~ 8921815 (-)
G41154 NA non-coding upstream 239139 8928462 ~ 8935377 (-)
G41052 col6a1,LOC102785632 other downstream 62195 8575851 ~ 8624441 (-)
fam43a fam43a,LOC106573864 other downstream 259541 8355999 ~ 8427095 (-)
G40959 NA other downstream 451940 8234107 ~ 8234696 (-)
LOC103030262 diaph3,LOC108428456,LOC108271281,LOC107741707 other downstream 599450 7514543 ~ 8087186 (-)
G40751 NA other downstream 2212562 6471432 ~ 6474074 (-)
G41071 col6a2 other upstream 8590 8697913 ~ 8740282 (-)
LOC103022371 b3g5a,LOC108439423 other upstream 422755 9112078 ~ 9122428 (-)
G41514 fth1,LOC103039853,LOC100692258,LOC104919244,LOC103365615,LOC105892494,LOC101464185,LOC100304657,LOC100528068 other upstream 1256882 9946205 ~ 9953351 (-)
G41522 NA other upstream 1273292 9962615 ~ 9963962 (-)
G41543 NA other upstream 1474137 10163460 ~ 10225826 (-)

Expression


Co-expression Network