LOC111192517


Basic Information

Item Value
gene id LOC111192517
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 18763320 ~ 18763619 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002649954.1
CACCAGTGCACAGGACTTCTGATAAAATCGTAAACTGTACTATGGCTGAAAATCAAGCGATGTGTAACATTTCTGGATTAAAGCCTTCTCAGGGGTACCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002649954.1 True 100 ncRNA 0.42 2 18763320 18763619

Neighbor

gene id symbol gene type direction distance location
ptprc NA coding downstream 552 18751658 ~ 18762768 (-)
nr5a2 nr5a2,LOC107699430 coding downstream 179406 18526935 ~ 18583914 (-)
camsap2 camsap2 coding downstream 364152 18333014 ~ 18399168 (-)
LOC103033650 wdr47,wdr47b,LOC107741541,LOC107564929,LOC107664763,LOC107655405,LOC107715726,LOC108271225 coding downstream 432106 18320175 ~ 18331214 (-)
clcc1 NA coding downstream 446966 18309740 ~ 18316354 (-)
nek7 nek7,LOC107719540,LOC107699433,LOC107674934 coding upstream 74446 18838065 ~ 18949635 (-)
lhx9 lhx9,LOC107674936,LOC107556179,LOC107586419,LOC107741549 coding upstream 202376 18965995 ~ 18976085 (-)
c5h1orf53 NA coding upstream 225830 18989449 ~ 18993418 (-)
crb1 NA coding upstream 409664 19173283 ~ 19208160 (-)
LOC111192519 NA coding upstream 470734 19234353 ~ 19242487 (-)
G43741 NA non-coding downstream 28172 18734939 ~ 18735148 (-)
LOC103038064 NA non-coding downstream 58366 18601871 ~ 18704954 (-)
G43716 NA non-coding downstream 299086 18463967 ~ 18464234 (-)
G43712 kif14 non-coding downstream 341963 18419249 ~ 18421357 (-)
G43709 kif14,LOC107717989,LOC107679839,LOC107586446 non-coding downstream 345578 18413589 ~ 18417742 (-)
LOC111192516 NA non-coding upstream 1561 18765180 ~ 18767773 (-)
G43773 NA non-coding upstream 7638 18771257 ~ 18778130 (-)
G43772 NA non-coding upstream 18153 18781772 ~ 18783907 (-)
LOC111192518 NA non-coding upstream 18698 18782317 ~ 18789564 (-)
G43847 NA non-coding upstream 459422 19223041 ~ 19227683 (-)
smim7 smim7,LOC107568062,LOC107703137,LOC107658516 other downstream 1518611 17242364 ~ 17244709 (-)
G43173 LOC108437262 other downstream 2061968 16698949 ~ 16701352 (-)
LOC111192556 NA other downstream 3273599 15425387 ~ 15489721 (-)
G42894 NA other downstream 3347321 15415655 ~ 15415999 (-)
G42850 NA other downstream 3544498 15217957 ~ 15218822 (-)
LOC103042724 NA other upstream 855804 19619423 ~ 19622153 (-)
oaz1 oaz1,LOC107655198,LOC107719576 other upstream 1322770 20086389 ~ 20090184 (-)
LOC103026129 LOC103026129,LOC105011584,LOC104949087,LOC106584418,LOC108439287,LOC105927846,LOC100708594 other upstream 1692762 20456381 ~ 20458320 (-)
LOC103027635 s1pr3a,LOC108439276,LOC107719654,LOC105927807,LOC101158267,LOC106584412 other upstream 1817659 20581278 ~ 20587592 (-)
LOC103028592 LOC108410694 other upstream 3347804 22111423 ~ 22121856 (-)

Expression


Co-expression Network