LOC111192556


Basic Information

Item Value
gene id LOC111192556
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 15425387 ~ 15489721 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>LOC111192556
TGACATCACGCACAGGGTCCGACCACAGTTACTGCTTTAACACTCGCACAGCTGAACTCTCTACTGCTGAAATGAGTTCCAGAACCGCACCGCTTCTCCTCCTGACTCTCACACTCCACTGCTTCCTATGGCAAACATCCATTAACCTCTCAGTGAAACCGGGTAAAAACGTCACTCTGAGCTGCCCTCTGAAGACCAGCATGAGCATCGGCATTGTGAGCTGGTACAAGCAGAACCCAGGAGAAGGTCCCAACATGCTGCTGAGCTACAGCATCACCACACCCTGGACAGTGCGCTATGCTGAGGGACTAAACCCTCACAGATACGTGGTGTTAGCCAGAAGAGTGTCCAGAGCTCATCACCGCCTGCGCATCCTCACCACTCAGGAAAACGACACGGCTACGTATTACTGCAGCTACTCAGAGAAGAGCGAAGGACAACTGAAGCCGTAGTCGTAGCAGAGACTGAAGAAGCTGAGCAGAAAAGATGTAGAAGAAGAGTCTGAAATAAATTTATATCAAGTCATGTTTGGTAGCAAATGTATATGAAAATGTAAGcagtttcattacttcaaagaaacacatttcagctattaattaaaaaaatatatggtttaaccc
>TU57863
tttttcttttgtttttattataaaatgatatgcaaaatatatatttgacatGGAAAAAAGACTAGAAAATACATTCATGTTTACATGAGTGCCATGAACTTTACATTCAGTGTGTTCCAACCTGAAGTCATTTGGAAATGAGGAAAATCCTTCCCATTTTTTGGAATGTTAAGTACACTTCAGAGTGGCATAACAAGTTCAAAGCTTACTGCAACATTGTGCATAATCCCTGTACTCGATATTGATTGctgttaaaaacaacaaaacaagacaaaaaaaagaaaaaataaggcACCTTGAACAAACATGGCTCGTAATCATCCTCCTCCTGACGTTACTAGAGCTCTAATAGTTTGTGCCTGCTGCAGCTTTGTACTGAACTGTGCTGTTGTTTTATGTTGAGTAatgatcatatatttttttgtacatcCACTGgcagaaaacaacacaacagccaatcagcagaaCTGAGCAGTAATCATTCCCAGTAACATTGGTAtatgaatatgtatatatgtagcTTTGCATTCGCTTTCTTTCTTTGCGAATTAAGACACGAACACTGATGAGCAGCTACATGCCATCAGcgcatcctctctctctctctctctctctctttctcgcaCTCAAGCCTGACAAGTTCAAGCCTACCAAACTTCAGAAGTACGagggtgggtttttttttttttctcttcaagAATAAAACCCACACAAACTTTGCTGCCTCCACGATTCTCATGCAATATCTGACAAATCTCATTGGCACACAGCTTAACTTTCATGCCCAGTATCACCCGTGCATATCGCAGCAGGTCTGAACCTGCACTACCTTTACACTAGATCTTATGTCACCTGCATACACAGCACAACATATGAGCTTAAAATCATAAGATTAACATTATTTCTTGATGGTAGGACTGTAATAGGGAAAGCAAGGGAAGGCACTTTGGAAGGAAGCATTTTGGCTACCACAGATTAGGGTTGACAGTTCATTATTGCGACATTATTGCGTCAACTATTAGGTGATGATATTAATACAGGATAAACCAAAATGTTCACTTGAAATAAATACAGGAACCTTCACGGTTAGGCACCATTTATAAGCGGCTTCTTCTTCTTGGTTTAATCTCCTTCCCCAGAACACAAACAGTCCACAGATTTCCACCAGTTGCAAACTTGGTAGGTTGACAGTCGATCGTTAGCGGGCACTGACCACAGCAGACTGAGGTCTGAGGACTCTGAAATGACCAGACAAATCCATCCAACTCGCACCTTTTCCCTCTCTTGCAGGGACTTGAAAGGATGTGAAAGAATATTATCCGGCCAGATAGTCCAATCAGTCAATCAAGCAACCGATTCCTCCTTCTCGGCCCCTCCACTCGATTGGCACTGCAGACCCTTGGGCGATGAGGCAAGTCCCAAGAGATGAGTACCAGTCTCAGCGATCCAGGGCATCCAGGAAGAAAGCAAATCTTTGCTTCGTTTCAATCAGCACATCACCACATGATGCTCAGATGCAATGGCGCTCAACAGGTCATGCAACGGGGTCTCATGTTGAAGGGCTGAGGATTGGGGTCCAC
>TU57864
TCACGCACAGGGTCCGACCACAGTTACTGCTTTAACACTCGCACAGCTGAACTCTCTACTGCTGAAATGAGTTCCAGAACCGCACCGCTTCTCCTCCTGACTCTCACACTCCACTGCTTCCTATGGCAAACATCCATTAACCTCTCAGTGAAACCGGGTAAAAACGTCACTCTGAGCTGCCCTCTGAAGACCAGCATGAGCATCGGCATTGTGAGCTGGTACAAGCAGAACCCAGGAGAAGGTCCCAACATGCTGCTGAGCTACAGCATCACCACACCCTGGACAGTGCGCTATGCTGAGGGACTAAACCCTCACAGATACGTGGTGTTAGCCAGAAGAGTGTCCAGAGCTCATCACCGCCTGCGCATCCTCACCACTCAGGAAAACGACACGGCTACGTATTACTGCAGCTACTCAGAGAAGAGCGAAGGACAACTGAAGCCGTAGTCGTAGCAGAGACTGAAGAAGCTGAGCAGAAAAGATGTAGAAGAAGAGTCTGAAATAAATTTATATCAAGTCATGTTTGGTAGCAAATGTATATGAAAATGTAAGcagtttcattacttcaaagaaacacatttcagctattaattaaaaaaatatatggtttaacccttgtgtggtgtttgggtctgtgggacccgttttcatttttcatcaaatgatacaaaaaatatttatacatataatatatgtttggccaagggctaataaacattgcttcatttgtaaatttgaaactaaacaaattttctactcatatcttgagtttaattcattttcttttacattttataaaaaaaaaatatataaaaaaaaagaaaaaaataaggcACCTTGAACAAACATGGCTCGTAATCATCCTCCTCCTGACGTTACTAGAGCTCTAATAGTTTGTGCCTGCTGCAGCTTTGTACTGAACTGTGCTGTTGTTTTATGTTGAGTAatgatcatatatttttttgtacatcCACTGgcagaaaacaacacaacagccaatcagcagaaCTGAGCAGTAATCATTCCCAGTAACATTGGTAtatgaatatgtatatatgtagcTTTGCATTCGCTTTCTTTCTTTGCGAATTAAGACACGAACACTGATGAGCAGCTACATGCCATCAGcgcatcctctctctctctctctctctctctttctcgcaCTCAAGCCTGACAAGTTCAAGCCTACCAAACTTCAGAAGTACGagggtgggtttttttttttttctcttcaagAATAAAACCCACACAAACTTTGCTGCCTCCACGATTCTCATGCAATATCTGACAAATCTCATTGGCACACAGCTTAACTTTCATGCCCAGTATCACCCGTGCATATCGCAGCAGGTCTGAACCTGCACTACCTTTACACTAGATCTTATGTCACCTGCATACACAGCACAACATATGAGCTTAAAATCATAAGATTAACATTATTTCTTGATGGTAGGACTGTAATAGGGAAAGCAAGGGAAGGCACTTTGGAAGGAAGCATTTTGGCTACCACAGATTAGGGTTGACAGTTCATTATTGCGACATTATTGCGTCAACTATTAGGTGATGATATTAATACAGGATAAACCAAAATGTTCACTTGAAATAAATACAGGAACCTTCACGGTTAGGCACCATTTATAAGCGGCTTCTTCTTCTTGGTTTAATCTCCTTCCCCAGAACACAAACAGTCCACAGATTTCCACCAGTTGCAAACTTGGTAGGTTGACAGTCGATCGTTAGCGGGCACTGACCACAGCAGACTGAGGTCTGAGGACTCTGAAATGACCAGACAAATCCATCCAACTCGCACCTTTTCCCTCTCTTGCAGGGACTTGAAAGGATGTGAAAGAATATTATCCGGCCAGATAGTCCAATCAGTCAATCAAGCAACCGATTCCTCCTTCTCGGCCCCTCCACTCGATTGGCACTGCAGACCCTTGGGCGATGAGGCAAGTCCCAAGAGATGAGTACCAGTCTCAGCGATCCAGGGCATCCAGGAAGAAAGCAAATCTTTGCTTCGTTTCAATCAGCACATCACCACATGATGCTCAGATGCAATGGCGCTCAACAGGTCATGCAACGGGGTCTCATGTTGAAGGGCTGAGGATTGGGGTCCAC
>TU57865
aaagcaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaaaataaggcACCTTGAACAAACATGGCTCGTAATCATCCTCCTCCTGACGTTACTAGAGCTCTAATAGTTTGTGCCTGCTGCAGCTTTGTACTGAACTGTGCTGTTGTTTTATGTTGAGTAatgatcatatatttttttgtacatcCACTGgcagaaaacaacacaacagccaatcagcagaaCTGAGCAGTAATCATTCCCAGTAACATTGGTAtatgaatatgtatatatgtagcTTTGCATTCGCTTTCTTTCTTTGCGAATTAAGACACGAACACTGATGAGCAGCTACATGCCATCAGcgcatcctctctctctctctctctctctctttctcgcaCTCAAGCCTGACAAGTTCAAGCCTACCAAACTTCAGAAGTACGagggtgggtttttttttttttctcttcaagAATAAAACCCACACAAACTTTGCTGCCTCCACGATTCTCATGCAATATCTGACAAATCTCATTGGCACACAGCTTAACTTTCATGCCCAGTATCACCCGTGCATATCGCAGCAGGTCTGAACCTGCACTACCTTTACACTAGATCTTATGTCACCTGCATACACAGCACAACATATGAGCTTAAAATCATAAGATTAACATTATTTCTTGATGGTAGGACTGTAATAGGGAAAGCAAGGGAAGGCACTTTGGAAGGAAGCATTTTGGCTACCACAGATTAGGGTTGACAGTTCATTATTGCGACATTATTGCGTCAACTATTAGGTGATGATATTAATACAGGATAAACCAAAATGTTCACTTGAAATAAATACAGGAACCTTCACGGTTAGGCACCATTTATAAGCGGCTTCTTCTTCTTGGTTTAATCTCCTTCCCCAGAACACAAACAGTCCACAGATTTCCACCAGTTGCAAACTTGGTAGGTTGACAGTCGATCGTTAGCGGGCACTGACCACAGCAGACTGAGGTCTGAGGACTCTGAAATGACCAGACAAATCCATCCAACTCGCACCTTTTCCCTCTCTTGCAGGGACTTGAAAGGATGTGAAAGAATATTATCCGGCCAGATAGTCCAATCAGTCAATCAAGCAACCGATTCCTCCTTCTCGGCCCCTCCACTCGATTGGCACTGCAGACCCTTGGGCGATGAGGCAAGTCCCAAGAGATGAGTACCAGTCTCAGCGATCCAGGGCATCCAGGAAGAAAGCAAATCTTTGCTTCGTTTCAATCAGCACATCACCACATGATGCTCAGATGCAATGGCGCTCAACAGGTCATGCAACGGGGTCTCATGTTGAAGGGCTGAGGATTGGGGTCCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC111192556 False 620 V_segment 0.47 2 15487709 15489721
TU57863 False 1580 lncRNA 0.42 2 15425387 15426986
TU57864 True 2121 TUCP 0.43 4 15425387 15489716
TU57865 False 1332 lncRNA 0.43 3 15425387 15434193

Neighbor

gene id symbol gene type direction distance location
mast3 mast3 coding downstream 80759 15309576 ~ 15344628 (-)
LOC103028830 LOC108438687 coding downstream 159852 15258569 ~ 15265535 (-)
LOC103026677 LOC108438650,LOC108270818,LOC107723066 coding downstream 220136 15174059 ~ 15205251 (-)
LOC103025036 chrna4,LOC446090,LOC107594120,LOC105920314 coding downstream 316063 15098372 ~ 15109324 (-)
LOC103024303 txlng,LOC107665847,LOC107602792,LOC107723067 coding downstream 364030 15051852 ~ 15061357 (-)
tmem259 tmem259,LOC107602804,LOC107723848,LOC107656092 coding upstream 298994 15788715 ~ 15804336 (-)
LOC103037800 slc1a8a,LOC108437258,LOC107753804,LOC107674556,LOC105011368,LOC105896421,LOC108271187 coding upstream 876388 16366109 ~ 16383428 (-)
slc39a3 slc39a3,LOC106613601 coding upstream 893793 16383514 ~ 16389369 (-)
sgta sgta,LOC107656077 coding upstream 901682 16391403 ~ 16398251 (-)
LOC103041228 LOC103041228,LOC108437285 coding upstream 944807 16434528 ~ 16439459 (-)
G42895 NA non-coding downstream 7685 15416920 ~ 15417702 (-)
G42882 NA non-coding downstream 46641 15377250 ~ 15378746 (-)
G42844 atp5b,LOC103392222 non-coding downstream 168915 15255185 ~ 15256472 (-)
G42841 mknk1 non-coding downstream 191081 15160803 ~ 15234306 (-)
G42913 NA non-coding upstream 23707 15513428 ~ 15598152 (-)
G42915 wdr18,LOC106613619 non-coding upstream 33789 15523510 ~ 15612104 (-)
G42984 NA non-coding upstream 334128 15823849 ~ 15826505 (-)
G42993 NA non-coding upstream 362517 15852238 ~ 15865453 (-)
G43005 NA non-coding upstream 433479 15923200 ~ 15929933 (-)
G42894 NA other downstream 9388 15415655 ~ 15415999 (-)
G42850 NA other downstream 206565 15217957 ~ 15218822 (-)
socs7 socs7 other downstream 458587 14949884 ~ 14966800 (-)
G42712 LOC108438667,LOC105021477,LOC107674533 other downstream 564049 14860554 ~ 14861338 (-)
G42661 NA other downstream 898497 14462673 ~ 14526890 (-)
G43173 LOC108437262 other upstream 1209228 16698949 ~ 16701352 (-)
smim7 smim7,LOC107568062,LOC107703137,LOC107658516 other upstream 1752643 17242364 ~ 17244709 (-)
LOC103042724 NA other upstream 4129702 19619423 ~ 19622153 (-)
oaz1 oaz1,LOC107655198,LOC107719576 other upstream 4596668 20086389 ~ 20090184 (-)
LOC103026129 LOC103026129,LOC105011584,LOC104949087,LOC106584418,LOC108439287,LOC105927846,LOC100708594 other upstream 4966660 20456381 ~ 20458320 (-)

Expression


Co-expression Network