G42712 (LOC108438667,LOC105021477,LOC107674533)


Basic Information

Item Value
gene id G42712
gene name LOC108438667,LOC105021477,LOC107674533
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 14860554 ~ 14861338 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU57565
ATTATTGACACACAGTCTACCTGATATGTTTGCTGGCTGGCTGAGCCGTGCTTCTGGGCATCCTGGTGGGCATTTATTAGCAGATTGACAAGCTTGGGAATAGCGTCTGCATCTCTGAGAGGTGcctgattggctggacacaATGCCAGGTTACGAATCAAGCCAACCACAGCCTTGACAACAGGCCAGTAGTATGGTTTGTTGAGCAGTTTGACGATAGCAGGGATGCCGTAATGTGTGCGGACGGCGTTTTGAGCCAACTCTGCTTCTGGGTGGCGGCTGGTGAGGTGGCGCAGGGCACAGGTAGCCGGTTCAGCCACGTCCTCCTTCTCTCCAGCCCGGAGCAGGGCGTGGATCAGTGCCTCCACTCCGTTGTTCTGAGTCACGTAAGTCTTGTTACGAGCATTGTTGCATGTGAGATTAGACAGGATTCCCGTAACACAGGCGAGCATGTTCACATCATCTGTGGACAGCAGGCCAATCAGCACCTGCAGCAGCCCGTCC

Function

NR:

description
PREDICTED: junction plakoglobin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU57565 True 504 TUCP 0.54 2 14860554 14861338

Neighbor

gene id symbol gene type direction distance location
LOC103045012 LOC108438669,LOC107718874,LOC108270845,LOC107674537 coding downstream 72615 14767351 ~ 14787939 (-)
LOC103027066 NA coding downstream 103959 14732698 ~ 14756595 (-)
LOC103032543 NA coding downstream 129511 14728485 ~ 14731043 (-)
LOC103031381 LOC103031381,LOC108270801,LOC108438672,LOC107392486,LOC107090776,LOC102787562,LOC101476066 coding downstream 171796 14685381 ~ 14688758 (-)
LOC103026498 NA coding downstream 185014 14672840 ~ 14675540 (-)
cdc6 cdc6,LOC102777898 coding upstream 9013 14870351 ~ 14877232 (-)
LOC103046425 NA coding upstream 17675 14879013 ~ 14891390 (-)
LOC103027360 NA coding upstream 31138 14892476 ~ 14908779 (-)
abcc10 abcc10 coding upstream 50403 14911741 ~ 14933779 (-)
sp2 sp2,LOC107718867 coding upstream 73557 14934895 ~ 14946795 (-)
G42714 NA non-coding downstream 2121 14834176 ~ 14858433 (-)
LOC103044803 NA non-coding downstream 32688 14799278 ~ 14827866 (-)
G42685 NA non-coding downstream 190202 14667725 ~ 14670352 (-)
G42686 NA non-coding downstream 191212 14668729 ~ 14669342 (-)
G42674 NA non-coding downstream 194189 14616416 ~ 14666365 (-)
G42711 NA non-coding upstream 5827 14867165 ~ 14868723 (-)
G42722 NA non-coding upstream 86282 14947620 ~ 14947849 (-)
G42746 rtel1 non-coding upstream 222138 15083476 ~ 15085974 (-)
G42830 bt3l4,btf3l4,LOC103026176,LOC107655993,LOC105028135,LOC107562065 non-coding upstream 276990 15138328 ~ 15141393 (-)
G42834 LOC108438649 non-coding upstream 282108 15143446 ~ 15146842 (-)
G42661 NA other downstream 333664 14462673 ~ 14526890 (-)
G42516 NA other downstream 521383 14335930 ~ 14339171 (-)
fam32a fam32a,LOC107757479 other downstream 554578 14303540 ~ 14305976 (-)
tm2d1 tm2d1,LOC107669801,LOC107653653,LOC107715116,LOC106574044,LOC107731529 other downstream 1697749 13142373 ~ 13162805 (-)
nr2c2ap nr2c2ap,LOC107554809,LOC107687739,LOC107728548 other downstream 3087452 11767698 ~ 11773102 (-)
socs7 socs7 other upstream 88546 14949884 ~ 14966800 (-)
G42850 NA other upstream 356619 15217957 ~ 15218822 (-)
G42894 NA other upstream 554317 15415655 ~ 15415999 (-)
LOC111192556 NA other upstream 564049 15425387 ~ 15489721 (-)
G43173 LOC108437262 other upstream 1837611 16698949 ~ 16701352 (-)

Expression


Co-expression Network