cdc6 (cdc6,LOC102777898)


Basic Information

Item Value
gene id cdc6
gene name cdc6,LOC102777898
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 14870351 ~ 14877232 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007240136.3
GCGCGCCAGAGGAGAGACTGCTGACAGTGGAGCTGCGGGTGAGAGACTTCCTGAGGAAAAACAGaagattattaaacattttatacagAGCTGCAAACTGGTCCTGTTACGAAAATGCCTAGCACTCGTTCCCAGAGTCAGCCAACCCTCCAGTTCCCCAAACGCAAGTCTTCCAGGGTAATCCAAAAGTCCAGCTCCAAGCGTTCGTCTCTGCCTGATACTGAGAATGCAGTTCGAGACCTTCCTTTGTCTCCCAGAAAGCCACACTTGGTGGATGTCCGAACAATCCCACTTTCTCCCAGAAAGACAAACCTGGCAGACCTCCATACCATCGCTCTCTCTCCCAGAAAGACCAGTGCTGATGTCCAAACCTTCCCCCTCTCACCCAGAAACCCAGTGCTCAAAACCAGCTCTTTGGCTGAGAGACTTCCCCTGAGCCCCCGCAAACGCACAGGCGATGAGAACGGATGCAACCTGCCAGCGTCTCTGCAGTGTTCTCCTCCTAAACAGAGGCGCCCCTCTTTGGGCTCCCCCCGCAAACTTTCCTTCAATGAGAATGCTCCAGTCTTCGGCTCTCCTCCTCGTTCTACCCAGTCACCTTCTAAAATCCCCCTCTCGCGTCTTTCTGCTGCTTCTCCCAAACGTTTGCAGACCGTCTGTGCTGATTTAGGGTCACCAGCTAAAGCTGCAGTCTCTCAGCTTTTTGCTGAACAAAAGTCACACTACCAGAGTGTGAAGCAGTCTCTGCACACAGCTGTGCCTGAACGACTGCTCTCTCGTGAAGCAGAGCGAGCTACCATTGTTTCGTTCCTGGAGAACCATGTGGTGCCTGGCAAGCCCTCCAGCCTGTACATCTCTGGAGCACCAGGGACGGGGAAGACAGCCTGCCTTAACTGTGTGCTTCAGGAACAGAAGGCTCTGCTGAAGGGAGTGCAGACTGTGGTAATTAACTGTATGACCTTGCGTAGCTCCCATTCGATCTTTCCTCTGTTGGCTGAGAAGTTGAAGACCTCTAAAAGCTCCAGTGGTggtaaactggagaaactgtTGACCAGTTCAGGGCCCACTGTGCTGTTGGTTCTGGATGAAATGGATCAGCTGGACAGCAAGTCCCAGGATGTTCTCTACACCATCTTTGAATGGCCTTATCTTTCAAAGTCCCGCCTGTGCCTCATAGGTATTGCCAATGCGCTGGATCTTACAGACCGTATTCTGCCCAGGTTGCAGACAAAGCCTCACTGCAGACCACAGCTCCTCCATTTCCCACCATACAGCCGCCAAGAGCTAACTGCCATCGTCCAAGACAGGCTTGCACAGgTATCAGGAGAGGGTGTTTTGGATGGTGCTGCTATCCAGTTTTGTGCCAGGAAGGTGTCAGCCGTGTCAGGAGATGCTCGCAAAGCACTGGACATCTgcagGAGAGCCGTTGAGATGGTTGAGTCCAAAAACAAATCCAAAGAGGCATCAGAACCCGCAGCAAATGCTAAAGCATCACGCGTGAGTGTTCCTCAGGTGGCTAAGGTCCTGTCTGAGGTGTATGGAGACAGGATGACAAGTAGTGCAGGAGGAGATGGAGAAAGCTTCCCTCTACAGCAGAAGCTCCTGGTCTGTTGCCTGCTGCTGCTCACACGCAACGGCAAGAGTAGAGAGGTCCAGTTAGGCAAGCTGTGTGAGGCCTACAGTAAACTGTGTAAGCAGaggcaggtcagtgcagtgggACAAGGTGAATGCCTGTCTCTGTGCAGCCTGCTGGAGAGCAGGGGTATCTTTTCTCTGAAGAAGGCCAAGGAAGCACGACTCACAAagatcTGTCTGAAGATTGAAGAAAAGGATGTGGAGAATGCTCTGAAGGATCGTGCACTGCTGGGCAGCATCTTGGCTGCAGGCCTTCCTTAAAGTTTTAAAGCTCTGATTTCCCTCACCATGTGATGACCTCAtttcagatatttatttttgtaaattttcttTTAATGAATTGTTTCTACAGCCCATAACCTTATGAAAGgtgtttttcctttatttttttcttttaattgtacatttagtgttttatattaaatgtacagtatgttttaaTGAAGTCACGTCATTTTTGTGTAACAGTTTCAACAattgttttgcattttattttaacattcgATGTAAATAAAACTGGGTGACCTCCATGAAA
>XM_022669676.1
AAGACCCCGATTAGCTGAAGCGCGCCAGAGGAGAGACTGCTGACAGTGGAGCTGCGGGTGAGAGACTTCCTGAGGAAAAACAGaagattattaaacattttatacagAGCTGCAAACTGGTCCTGTTACGAAAATGCCTAGCACTCGTTCCCAGAGTCAGCCAACCCTCCAGTTCCCCAAACGCAAGTCTTCCAGGGTAATCCAAAAGTCCAGCTCCAAGCGTTCGTCTCTGCCTGATACTGAGAATGCAGTTCGAGACCTTCCTTTGTCTCCCAGAAAGCCACACTTGGTGGATGTCCGAACAATCCCACTTTCTCCCAGAAAGACAAACCTGGCAGACCTCCATACCATCGCTCTCTCTCCCAGAAAGACCAGTGCTGATGTCCAAACCTTCCCCCTCTCACCCAGAAACCCAGTGCTCAAAACCAGCTCTTTGGCTGAGAGACTTCCCCTGAGCCCCCGCAAACGCACAGGCGATGAGAACGGATGCAACCTGCCAGCGTCTCTGCAGTGTTCTCCTCCTAAACAGAGGCGCCCCTCTTTGGGCTCCCCCCGCAAACTTTCCTTCAATGAGAATGCTCCAGTCTTCGGCTCTCCTCCTCGTTCTACCCAGTCACCTTCTAAAATCCCCCTCTCGCGTCTTTCTGCTGCTTCTCCCAAACGTTTGCAGACCGTCTGTGCTGATTTAGGGTCACCAGCTAAAGCTGCAGTCTCTCAGCTTTTTGCTGAACAAAAGTCACACTACCAGAGTGTGAAGCAGTCTCTGCACACAGCTGTGCCTGAACGACTGCTCTCTCGTGAAGCAGAGCGAGCTACCATTGTTTCGTTCCTGGAGAACCATGTGGTGCCTGGCAAGCCCTCCAGCCTGTACATCTCTGGAGCACCAGGGACGGGGAAGACAGCCTGCCTTAACTGTGTGCTTCAGGAACAGAAGGCTCTGCTGAAGGGAGTGCAGACTGTGGTAATTAACTGTATGACCTTGCGTAGCTCCCATTCGATCTTTCCTCTGTTGGCTGAGAAGTTGAAGACCTCTAAAAGCTCCAGTGGTggtaaactggagaaactgtTGACCAGTTCAGGGCCCACTGTGCTGTTGGTTCTGGATGAAATGGATCAGCTGGACAGCAAGTCCCAGGATGTTCTCTACACCATCTTTGAATGGCCTTATCTTTCAAAGTCCCGCCTGTGCCTCATAGGTATTGCCAATGCGCTGGATCTTACAGACCGTATTCTGCCCAGGTTGCAGACAAAGCCTCACTGCAGACCACAGCTCCTCCATTTCCCACCATACAGCCGCCAAGAGCTAACTGCCATCGTCCAAGACAGGCTTGCACAGgTATCAGGAGAGGGTGTTTTGGATGGTGCTGCTATCCAGTTTTGTGCCAGGAAGGTGTCAGCCGTGTCAGGAGATGCTCGCAAAGCACTGGACATCTgcagGAGAGCCGTTGAGATGGTTGAGTCCAAAAACAAATCCAAAGAGGCATCAGAACCCGCAGCAAATGCTAAAGCATCACGCGTGAGTGTTCCTCAGGTGGCTAAGGTCCTGTCTGAGGTGTATGGAGACAGGATGACAAGTAGTGCAGGAGGAGATGGAGAAAGCTTCCCTCTACAGCAGAAGCTCCTGGTCTGTTGCCTGCTGCTGCTCACACGCAACGGCAAGAGTAGAGAGGTCCAGTTAGGCAAGCTGTGTGAGGCCTACAGTAAACTGTGTAAGCAGaggcaggtcagtgcagtgggACAAGGTGAATGCCTGTCTCTGTGCAGCCTGCTGGAGAGCAGGGGTATCTTTTCTCTGAAGAAGGCCAAGGAAGCACGACTCACAAagatcTGTCTGAAGATTGAAGAAAAGGATGTGGAGAATGCTCTGAAGGATCGTGCACTGCTGGGCAGCATCTTGGCTGCAGGCCTTCCTTAAAGTTTTAAAGCTCTGATTTCCCTCACCATGTGATGACCTCAtttcagatatttatttttgtaaattttcttTTAATGAATTGTTTCTACAGCCCATAACCTTATGAAAGgtgtttttcctttatttttttcttttaattgtacatttagtgttttatattaaatgtacagtatgttttaaTGAAGTCACGTCATTTTTGTGTAACAGTTTCAACAattgttttgcattttattttaacattcgATGTAAATAAAACTGGGTGACCTCCATGAAA

Function

symbol description
cdc6 Predicted to enable DNA replication origin binding activity. Acts upstream of or within mitotic cell cycle phase transition. Predicted to be active in nucleus. Is expressed in central nervous system and proliferative region. Used to study Meier-Gorlin syndrome. Human ortholog(s) of this gene implicated in Meier-Gorlin syndrome 5. Orthologous to human CDC6 (cell division cycle 6).

NR:

description
cell division control protein 6 homolog isoform X1

GO:

id name namespace
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K02213 CDC6; cell division control protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007240136.3 False 2170 mRNA 0.49 12 14870351 14877232
XM_022669676.1 True 2189 mRNA 0.49 12 14870351 14876172

Neighbor

gene id symbol gene type direction distance location
LOC103045012 LOC108438669,LOC107718874,LOC108270845,LOC107674537 coding downstream 82412 14767351 ~ 14787939 (-)
LOC103027066 NA coding downstream 113756 14732698 ~ 14756595 (-)
LOC103032543 NA coding downstream 139308 14728485 ~ 14731043 (-)
LOC103031381 LOC103031381,LOC108270801,LOC108438672,LOC107392486,LOC107090776,LOC102787562,LOC101476066 coding downstream 181593 14685381 ~ 14688758 (-)
LOC103026498 NA coding downstream 194811 14672840 ~ 14675540 (-)
LOC103046425 NA coding upstream 1781 14879013 ~ 14891390 (-)
LOC103027360 NA coding upstream 15244 14892476 ~ 14908779 (-)
abcc10 abcc10 coding upstream 34509 14911741 ~ 14933779 (-)
sp2 sp2,LOC107718867 coding upstream 57663 14934895 ~ 14946795 (-)
mrpl45 mrpl45,LOC107680544 coding upstream 119768 14997000 ~ 15002143 (-)
G42711 NA non-coding downstream 1628 14867165 ~ 14868723 (-)
G42714 NA non-coding downstream 11918 14834176 ~ 14858433 (-)
LOC103044803 NA non-coding downstream 42485 14799278 ~ 14827866 (-)
G42685 NA non-coding downstream 199999 14667725 ~ 14670352 (-)
G42686 NA non-coding downstream 201009 14668729 ~ 14669342 (-)
G42722 NA non-coding upstream 70388 14947620 ~ 14947849 (-)
G42746 rtel1 non-coding upstream 206244 15083476 ~ 15085974 (-)
G42830 bt3l4,btf3l4,LOC103026176,LOC107655993,LOC105028135,LOC107562065 non-coding upstream 261096 15138328 ~ 15141393 (-)
G42834 LOC108438649 non-coding upstream 266214 15143446 ~ 15146842 (-)
G42835 NA non-coding upstream 271047 15148279 ~ 15148791 (-)
G42712 LOC108438667,LOC105021477,LOC107674533 other downstream 9013 14860554 ~ 14861338 (-)
G42661 NA other downstream 343461 14462673 ~ 14526890 (-)
G42516 NA other downstream 531180 14335930 ~ 14339171 (-)
fam32a fam32a,LOC107757479 other downstream 564375 14303540 ~ 14305976 (-)
tm2d1 tm2d1,LOC107669801,LOC107653653,LOC107715116,LOC106574044,LOC107731529 other downstream 1707546 13142373 ~ 13162805 (-)
socs7 socs7 other upstream 72652 14949884 ~ 14966800 (-)
G42850 NA other upstream 340725 15217957 ~ 15218822 (-)
G42894 NA other upstream 538423 15415655 ~ 15415999 (-)
LOC111192556 NA other upstream 548155 15425387 ~ 15489721 (-)
G43173 LOC108437262 other upstream 1821717 16698949 ~ 16701352 (-)

Expression


Co-expression Network