G42830 (bt3l4,btf3l4,LOC103026176,LOC107655993,LOC105028135,LOC107562065)


Basic Information

Item Value
gene id G42830
gene name bt3l4,btf3l4,LOC103026176,LOC107655993,LOC105028135,LOC107562065
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 15138328 ~ 15141393 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU57763
AAAGGTTTATGATATTTATTGTTTCattgacaaaaataataattaagacTAGTTATTCCATAACCACACCAATCATGGTCAAGATTGCAATGTGGTATTCATCCTGAACCGTAAGTTATAGCTCATAACCGCCTTCTCATTTAAGTGCAAGAACCAGGCCAATGAAGATTATCTAGGCAGACCGccaatttaaaatacaaaagtcTCTGCACTGCTGGATAGTGTTGAAATGATATGTCGCCAGTCATCTAATTTAAAATACTGCAACAGGGTCTTCCCTGAACTGCAATTCCAATTAAAGAGGTCGTGCGGAATCAGTTTGCCTCATTCTTTGATGCTTCATCAAAGTTCTCCACCAGATCTGGGACATCATCGTCCTCCTCATCAATATCTTCTGCTTTGGGGGCTTTGTTGTCGAGAACTTGTCTGGGGAACTGCTCCGCTATTTTACGCAAACTTGTAAGACTGTCTGCGCCGAGTTGACTGAGAATACCGGGTAGCATCTCTGTCAACTGCTTGGTCTCTGCATGGCCTGTAATGGCAAACGTGTTGGCAGACAAAGACGCCTGCACTTTGGGATTATTGAAATGGATCACGGTCCCATCGTCCTTTATCATGTTCACCTCCTCTATGCCAGCGATGTTATTCACAGCAAGTTTCTTTAAGGAACTCTGAAGTTTTTTGTCGTCAGCTGTTGCTGTTCTGTGGACGACCTTCTTCTTCCTACGTGCTGtgccCTTGCCCCCTATTCGGACTTGGGCTTGAAGTTTAGCGAGTTTCTCTTGATTCATATTGTcttCTGTTCCCCACAGCTGCTCAGAAAAGCATGC

Function

symbol description
btf3l4 Orthologous to human BTF3L4 (basic transcription factor 3 like 4).

NR:

description
transcription factor BTF3 homolog 4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU57763 True 830 lncRNA 0.43 6 15138328 15141393

Neighbor

gene id symbol gene type direction distance location
LOC103025036 chrna4,LOC446090,LOC107594120,LOC105920314 coding downstream 29004 15098372 ~ 15109324 (-)
LOC103024303 txlng,LOC107665847,LOC107602792,LOC107723067 coding downstream 76971 15051852 ~ 15061357 (-)
zrsr2 zrsr2,LOC107729896,LOC107602790 coding downstream 93057 15040101 ~ 15045271 (-)
LOC103022633 npepps,LOC107718863,LOC107674532,LOC107680533,LOC107753845 coding downstream 109709 15005407 ~ 15028619 (-)
mrpl45 mrpl45,LOC107680544 coding downstream 136185 14997000 ~ 15002143 (-)
LOC103026677 LOC108438650,LOC108270818,LOC107723066 coding upstream 32666 15174059 ~ 15205251 (-)
LOC103028830 LOC108438687 coding upstream 117176 15258569 ~ 15265535 (-)
mast3 mast3 coding upstream 168183 15309576 ~ 15344628 (-)
LOC103031895 NA coding upstream 340042 15481435 ~ 15483402 (-)
tmem259 tmem259,LOC107602804,LOC107723848,LOC107656092 coding upstream 647322 15788715 ~ 15804336 (-)
G42746 rtel1 non-coding downstream 52354 15083476 ~ 15085974 (-)
G42722 NA non-coding downstream 190479 14947620 ~ 14947849 (-)
G42711 NA non-coding downstream 269605 14867165 ~ 14868723 (-)
G42714 NA non-coding downstream 279895 14834176 ~ 14858433 (-)
LOC103044803 NA non-coding downstream 310462 14799278 ~ 14827866 (-)
G42834 LOC108438649 non-coding upstream 2053 15143446 ~ 15146842 (-)
G42835 NA non-coding upstream 6886 15148279 ~ 15148791 (-)
G42841 mknk1 non-coding upstream 19410 15160803 ~ 15234306 (-)
G42831 NA non-coding upstream 28192 15169585 ~ 15172321 (-)
G42854 NA non-coding upstream 82536 15223929 ~ 15225229 (-)
socs7 socs7 other downstream 171528 14949884 ~ 14966800 (-)
G42712 LOC108438667,LOC105021477,LOC107674533 other downstream 276990 14860554 ~ 14861338 (-)
G42661 NA other downstream 611438 14462673 ~ 14526890 (-)
G42516 NA other downstream 799157 14335930 ~ 14339171 (-)
fam32a fam32a,LOC107757479 other downstream 832352 14303540 ~ 14305976 (-)
G42850 NA other upstream 76564 15217957 ~ 15218822 (-)
G42894 NA other upstream 274262 15415655 ~ 15415999 (-)
LOC111192556 NA other upstream 283994 15425387 ~ 15489721 (-)
G43173 LOC108437262 other upstream 1557556 16698949 ~ 16701352 (-)
smim7 smim7,LOC107568062,LOC107703137,LOC107658516 other upstream 2100971 17242364 ~ 17244709 (-)

Expression


Co-expression Network