LOC103031895


Basic Information

Item Value
gene id LOC103031895
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 15481435 ~ 15483402 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>LOC103031895
TCTAACCGCCTTCACTCACGTCTTTCTCAGTCTGAgcatgagagagaatgagagcacAGACGCTGATCACAGCTTTACTTTTACTCAGCGTAAGCCGAGGTTCAGAGGTGGATCCGAAGATGTTCTTGTTTAGTCGAGGTGTTCAGCTGGAAGTTACAgCAATCAGAATCAGGACTAAGCTTCAGCCTCCTGTAGTGCAGATTCTGGTTCCTACTGAACTTCAGATGGAAACTTCCAGCACAGCCATGCTCACCTGTATCATCAGAGGATTAAACAGTAATCTGACTGCCATCACTTGGAAGATTAATGACACAGCTGTGGCAcagaggagcagcagcagtgaggtGTTTAAACAGCCTGACGGCACGTTCAGCGCTTTAGGATTCTACTCAGCGCCGCTGCAGGACTGGAAGAGTGATGGGGTGTACAGGTGTGAGGTGAAGCAAGGAGGAATAACTTACTTTAAAGAGGTGCGGCACTCTCTCTGTGGAGAGTTCTTCAGTTTGTGATGAATCTGTGATAAAGGCTGGACTTTTACTTAAAGCCACAGAATTGTATAAATTGACTTTAAATTCACATTGGTTTTATATGCACTGTGTGGTTATAGTTACTGTATATTCATTagtctttattaaatatattattgacAGCTTGCTGTGCTTTTTCTGTGAAGACACTGAACTTTTACGTTACActtttaggcccaatcccatttcaccccttggccctacctcttacccctacccctctgtttcgCTCGTGCATGCCGAGgggtacactgaaaaaaatgatgaatgaaagagtaaaatttactttaaaaaagtttc

Function

GO: NA

KEGG:

id description
ko04145 Phagosome
ko04380 Osteoclast differentiation
ko05150 Staphylococcus aureus infection
ko05140 Leishmaniasis

RNA

RNA id representative length rna type GC content exon number start site end site
LOC103031895 True 827 C_region 0.44 3 15481435 15483402

Neighbor

gene id symbol gene type direction distance location
mast3 mast3 coding downstream 136807 15309576 ~ 15344628 (-)
LOC103028830 LOC108438687 coding downstream 215900 15258569 ~ 15265535 (-)
LOC103026677 LOC108438650,LOC108270818,LOC107723066 coding downstream 276184 15174059 ~ 15205251 (-)
LOC103025036 chrna4,LOC446090,LOC107594120,LOC105920314 coding downstream 372111 15098372 ~ 15109324 (-)
LOC103024303 txlng,LOC107665847,LOC107602792,LOC107723067 coding downstream 420078 15051852 ~ 15061357 (-)
tmem259 tmem259,LOC107602804,LOC107723848,LOC107656092 coding upstream 305313 15788715 ~ 15804336 (-)
LOC103037800 slc1a8a,LOC108437258,LOC107753804,LOC107674556,LOC105011368,LOC105896421,LOC108271187 coding upstream 882707 16366109 ~ 16383428 (-)
slc39a3 slc39a3,LOC106613601 coding upstream 900112 16383514 ~ 16389369 (-)
sgta sgta,LOC107656077 coding upstream 908001 16391403 ~ 16398251 (-)
LOC103041228 LOC103041228,LOC108437285 coding upstream 951126 16434528 ~ 16439459 (-)
G42895 NA non-coding downstream 63733 15416920 ~ 15417702 (-)
G42882 NA non-coding downstream 102689 15377250 ~ 15378746 (-)
G42844 atp5b,LOC103392222 non-coding downstream 224963 15255185 ~ 15256472 (-)
G42841 mknk1 non-coding downstream 247129 15160803 ~ 15234306 (-)
G42854 NA non-coding downstream 256206 15223929 ~ 15225229 (-)
G42913 NA non-coding upstream 30026 15513428 ~ 15598152 (-)
G42915 wdr18,LOC106613619 non-coding upstream 40108 15523510 ~ 15612104 (-)
G42984 NA non-coding upstream 340447 15823849 ~ 15826505 (-)
G42993 NA non-coding upstream 368836 15852238 ~ 15865453 (-)
G43005 NA non-coding upstream 439798 15923200 ~ 15929933 (-)
G42894 NA other downstream 65436 15415655 ~ 15415999 (-)
G42850 NA other downstream 262613 15217957 ~ 15218822 (-)
socs7 socs7 other downstream 514635 14949884 ~ 14966800 (-)
G42712 LOC108438667,LOC105021477,LOC107674533 other downstream 620097 14860554 ~ 14861338 (-)
G42661 NA other downstream 954545 14462673 ~ 14526890 (-)
G43173 LOC108437262 other upstream 1215547 16698949 ~ 16701352 (-)
smim7 smim7,LOC107568062,LOC107703137,LOC107658516 other upstream 1758962 17242364 ~ 17244709 (-)
LOC103042724 NA other upstream 4136021 19619423 ~ 19622153 (-)
oaz1 oaz1,LOC107655198,LOC107719576 other upstream 4602987 20086389 ~ 20090184 (-)
LOC103026129 LOC103026129,LOC105011584,LOC104949087,LOC106584418,LOC108439287,LOC105927846,LOC100708594 other upstream 4972979 20456381 ~ 20458320 (-)

Expression


Co-expression Network