G42844 (atp5b,LOC103392222)


Basic Information

Item Value
gene id G42844
gene name atp5b,LOC103392222
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 15255185 ~ 15256472 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU57796
caCACATTcaattaacaccagcagtcttgGCTTCCGAAGACATGATAGCACATTTGctacaaataaacaatactTCACACACCTGAAGGATCTTCTGGACACCACGAGCAACATCGTAGTGCTCAGTTCCCACAATGTTGGGGTCCATGATACGGGAGGTGGAATCAAGGGGATCCACAGCAGGGTAGATACCCAGCTCAGCAATAGCACGGGACAACACAGTGGTGGCGTCCAAGTGAGCAAAGGTGGTGGCAGGGGCAGGGTCAGTCAAGTCATCAGCAGGCACATAGATGCCTGTACAGATGTGATTGAGCCCTTCTTTGTGGTGGTGATTCTCTCCTGCATGGTACCCATGTCAGTGGCCAGAGTTGGCTGATAACCCACAGCAGAGGGGATACGACCCAGCAGAGCAGACACCTCTGATCCAGCCTGGGTGAATCGGAAGATGTTGTCAATAAAGAGCAGCACATCCTGTCCTTCCTGATCACGGAAATATTCGGCAACGGTCAGTCCAGTCAGAGCCACACGGGCACGAGCGCCTGGGGGCTCGTTCATCTGTCCGTATACCAGGGCGACCTTGGATGTGGTGTCCTTCAGGTTGATGACACCAGACTCAATCATTTCATGGTACAGATCGTTTCCCTCACGGGTCCTCTCCCCCACACCAGCAAACACTGAGTAACCACCATGGGCTTTAGCCACATTGTTGATCAACTCCATGATCAATACAGTTTTTCCTACTCCGGCACCACCGAACAGACCTACACAAATATGGAGGGAAAGAGCATATGCAATTACAGAAATGTCAC

Function

symbol description
atp5b Predicted to enable several functions, including adenyl ribonucleotide binding activity; angiostatin binding activity; and proton-transporting ATPase activity, rotational mechanism. Predicted to contribute to proton-transporting ATP synthase activity, rotational mechanism. Acts upstream of or within cellular response to interleukin-7; lipid metabolic process; and negative regulation of cell adhesion involved in substrate-bound cell migration. Located in mitochondrion. Is expressed in several structures, including alimentary system; central nervous system; eye; heart; and integumental system. Orthologous to human ATP5F1B (ATP synthase F1 subunit beta).

NR:

description
plakophilin-4 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU57796 True 809 lncRNA 0.51 4 15255185 15256472

Neighbor

gene id symbol gene type direction distance location
LOC103026677 LOC108438650,LOC108270818,LOC107723066 coding downstream 49934 15174059 ~ 15205251 (-)
LOC103025036 chrna4,LOC446090,LOC107594120,LOC105920314 coding downstream 145861 15098372 ~ 15109324 (-)
LOC103024303 txlng,LOC107665847,LOC107602792,LOC107723067 coding downstream 193828 15051852 ~ 15061357 (-)
zrsr2 zrsr2,LOC107729896,LOC107602790 coding downstream 209914 15040101 ~ 15045271 (-)
LOC103022633 npepps,LOC107718863,LOC107674532,LOC107680533,LOC107753845 coding downstream 226566 15005407 ~ 15028619 (-)
LOC103028830 LOC108438687 coding upstream 2097 15258569 ~ 15265535 (-)
mast3 mast3 coding upstream 53104 15309576 ~ 15344628 (-)
LOC103031895 NA coding upstream 224963 15481435 ~ 15483402 (-)
tmem259 tmem259,LOC107602804,LOC107723848,LOC107656092 coding upstream 532243 15788715 ~ 15804336 (-)
LOC103037800 slc1a8a,LOC108437258,LOC107753804,LOC107674556,LOC105011368,LOC105896421,LOC108271187 coding upstream 1109637 16366109 ~ 16383428 (-)
G42841 mknk1 non-coding downstream 20879 15160803 ~ 15234306 (-)
G42854 NA non-coding downstream 29956 15223929 ~ 15225229 (-)
G42831 NA non-coding downstream 82864 15169585 ~ 15172321 (-)
G42835 NA non-coding downstream 106394 15148279 ~ 15148791 (-)
G42834 LOC108438649 non-coding downstream 108343 15143446 ~ 15146842 (-)
G42882 NA non-coding upstream 120778 15377250 ~ 15378746 (-)
G42895 NA non-coding upstream 160448 15416920 ~ 15417702 (-)
G42913 NA non-coding upstream 256956 15513428 ~ 15598152 (-)
G42915 wdr18,LOC106613619 non-coding upstream 267038 15523510 ~ 15612104 (-)
G42984 NA non-coding upstream 567377 15823849 ~ 15826505 (-)
G42850 NA other downstream 36363 15217957 ~ 15218822 (-)
socs7 socs7 other downstream 288385 14949884 ~ 14966800 (-)
G42712 LOC108438667,LOC105021477,LOC107674533 other downstream 393847 14860554 ~ 14861338 (-)
G42661 NA other downstream 728295 14462673 ~ 14526890 (-)
G42516 NA other downstream 916014 14335930 ~ 14339171 (-)
G42894 NA other upstream 159183 15415655 ~ 15415999 (-)
LOC111192556 NA other upstream 168915 15425387 ~ 15489721 (-)
G43173 LOC108437262 other upstream 1442477 16698949 ~ 16701352 (-)
smim7 smim7,LOC107568062,LOC107703137,LOC107658516 other upstream 1985892 17242364 ~ 17244709 (-)
LOC103042724 NA other upstream 4362951 19619423 ~ 19622153 (-)

Expression


Co-expression Network