G42882


Basic Information

Item Value
gene id G42882
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 15377250 ~ 15378746 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU57843
TGTTGATaattttagtttatagtttatgatatttttcacactttgaAATCACAGAGATGTGATCACAATTGattaacattaaatgtattaaaaggtaacttttaaaaatatattatttattaaatagatataaatGACTTTTTACAACTTCCTTCTAACCAGTTAAGACAGAAACTTGTGATGTTGCACAGTATCAAAATTAAGTAATTCAAAATCTGAATAAAGCGTAATAAATGATCACTGTGTGACACATGAAATGTTCTGGTATGAAtgtttttctgatgtttttgcAGTCAGTCGAGACTTCCTTCTCTCTTAACATTTAGAACTGGGTATAGCTGGTTCTGCtcaatggaaaaaagaaaaaaaagcaggctGCAAAACCTACACATATTCATTCAGATTTGTTTACTGGTTTCTGCTTTACTTAAACCATGAAGCTGCACACAAAAACCACTACACTCTAACACTACACTTAAGTCTCACACCCTGATCATTTGTTTCTGCTTGATTTTTATCTGAATATTGTGGAAACTGTGTCTGATTTGTGCTGAGATTTGAGATCTGTGGTGCTCATAAACAAACTCACAGTCTCTGCAGGGTAATCATCTACACCCTGTTTTATGGTCAGATCCAGATCTTAGATTTAGCATGATAACCTACTACCTACGGTCTgttgtagggttagattcaTCTAGTAAAGTTAGCATAATAAGTAGGCCGGTCATGATTTTTACATTATCGACTCATATGACAATCAACAATGAACCAATATTTTAGCCAGTTGCGTAGCCAATGGCAATACAGCTGACCTTCTACTTGTTGTTACTTAATTAATTTCACTtagaatatttcatttttattatagtctaatagtctaatttattatttatagtagtactattattattgttacttATTTACTGTTCGTTTAAAGTGCCATTGGACTACTGCTCAGTTTCACTGTACACTGTGTAACGACAGTAGAGGCATCTTATCTtaacttatcttatcttatcttatcttatcttatcttatcttatctatctTATACAGACCCAAAACACTTCAAGAGGTAGCCTGAAACAAAGCTTTTTAGCTTTGTGAATGCATCTGTCTATTTAAGATGCTTTTGAGAACCGAAACTTCTCTCAGtgcaactgaaaaaaacagtaataattgtCATGCAAAGACCAAATTTGCATATTCTGTCCcacacagaaataaaatttTACTATGACTAATAAAATCCAAATTACAATCCAGATGCTAGTCACCTGAAGTGTAAATATTCCGTACAATATTTACCCACAGAGCCTAAAAGTCCAGTTTACAtagaagttttattttatttatatttgtatttatttaggatttagaagtagttttaaacattttatattacaaattCAAATTCTGAATGTtcttaataatgtaattaattcattaaatataatgttctataaaacattgtaattatattatcatggttttaat

Function

NR:

description
PREDICTED: sodium- and chloride-dependent taurine transporter-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU57843 True 1497 lncRNA 0.30 1 15377250 15378746

Neighbor

gene id symbol gene type direction distance location
mast3 mast3 coding downstream 32622 15309576 ~ 15344628 (-)
LOC103028830 LOC108438687 coding downstream 111715 15258569 ~ 15265535 (-)
LOC103026677 LOC108438650,LOC108270818,LOC107723066 coding downstream 171999 15174059 ~ 15205251 (-)
LOC103025036 chrna4,LOC446090,LOC107594120,LOC105920314 coding downstream 267926 15098372 ~ 15109324 (-)
LOC103024303 txlng,LOC107665847,LOC107602792,LOC107723067 coding downstream 315893 15051852 ~ 15061357 (-)
LOC103031895 NA coding upstream 102689 15481435 ~ 15483402 (-)
tmem259 tmem259,LOC107602804,LOC107723848,LOC107656092 coding upstream 409969 15788715 ~ 15804336 (-)
LOC103037800 slc1a8a,LOC108437258,LOC107753804,LOC107674556,LOC105011368,LOC105896421,LOC108271187 coding upstream 987363 16366109 ~ 16383428 (-)
slc39a3 slc39a3,LOC106613601 coding upstream 1004768 16383514 ~ 16389369 (-)
sgta sgta,LOC107656077 coding upstream 1012657 16391403 ~ 16398251 (-)
G42844 atp5b,LOC103392222 non-coding downstream 120778 15255185 ~ 15256472 (-)
G42841 mknk1 non-coding downstream 142944 15160803 ~ 15234306 (-)
G42854 NA non-coding downstream 152021 15223929 ~ 15225229 (-)
G42831 NA non-coding downstream 204929 15169585 ~ 15172321 (-)
G42835 NA non-coding downstream 228459 15148279 ~ 15148791 (-)
G42895 NA non-coding upstream 38174 15416920 ~ 15417702 (-)
G42913 NA non-coding upstream 134682 15513428 ~ 15598152 (-)
G42915 wdr18,LOC106613619 non-coding upstream 144764 15523510 ~ 15612104 (-)
G42984 NA non-coding upstream 445103 15823849 ~ 15826505 (-)
G42993 NA non-coding upstream 473492 15852238 ~ 15865453 (-)
G42850 NA other downstream 158428 15217957 ~ 15218822 (-)
socs7 socs7 other downstream 410450 14949884 ~ 14966800 (-)
G42712 LOC108438667,LOC105021477,LOC107674533 other downstream 515912 14860554 ~ 14861338 (-)
G42661 NA other downstream 850360 14462673 ~ 14526890 (-)
G42516 NA other downstream 1038079 14335930 ~ 14339171 (-)
G42894 NA other upstream 36909 15415655 ~ 15415999 (-)
LOC111192556 NA other upstream 46641 15425387 ~ 15489721 (-)
G43173 LOC108437262 other upstream 1320203 16698949 ~ 16701352 (-)
smim7 smim7,LOC107568062,LOC107703137,LOC107658516 other upstream 1863618 17242364 ~ 17244709 (-)
LOC103042724 NA other upstream 4240677 19619423 ~ 19622153 (-)

Expression


Co-expression Network