G42854


Basic Information

Item Value
gene id G42854
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 15223929 ~ 15225229 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU57809
AACAAGTCTGAAAACCTGACCTTCATACTGGCACTCATTCAACTTCACTTTCAAATTAATCACAAACAGACAAGGCATGCAGTTTTTATTCTCCCAGTCTTTTGGCAATGCAGCTGGTATGACAGGGGAAGATGTTCATTGGAAGATTCTGTTTCATTTAGACAATAGATAAAAACATgcacaaagaaaataaagtggAAGACACACAacatattttcataaaaatgaaaataatgaaaatgcaAGAAAGGGCCTGTGGCACTTTCACATTGCCAAGACTGCTGCATTTCAAACCAGCCCTGAAACATCAGGCATGTTATGTCATGCCCTGAATGCAACTGCTTGAAAAAAGGCATACAAAAACAAGTCTGTTCTCATCCTCAGGAACataaattataacaaaaaacattgtcAAACCACATATCAGATTCTCCAGAAATGTGAGTCTTTCCCATGCTGTGATAAAGAGGACATGTTCTGAGAGTACAATTATAATTTGATGGCAGTAGGGCACACCACTAGCACAGCTGTTTTGCAATGCTAAATATTTCTAGtgcatttttgtcttttaaagaCTGATTAATAACTGAAACATAAAGGACTTTGACACAGTTAGCATTATTGGTCCCAAAAACCTAGTCACTATTGGAATAACACTTCTGCCTTAGTTACATATGTTTGGCTCACTGAAGTACTGGGATGAGAtcctaaaacaaaacaacacaacgtAGATTAAGAATACATTGTTGCCCAGCAGATTAGGGAACAGTCACTATGATTTGTAGATTGCAGGTCTTAATCCCTAATCaggctgcttgccatcagcagccggagtccgagagagaatTATTGGCCTTGCTCTCAATGGGTGGGTAGAGAGAGCTCTCTTTACCCACATCTCTGTCAATGTGATggtggtcagcacaggcatctgttatctgttgtatcagagctggagtgctgtgctttcctctgagcactctggtGACCCAGTTGAAAAAGAggaaTGTACTAGTCTTCATGCTCCTAGTTGGGGGCATTAGTAGTTATAGGGAGATTTGTTATGAACAAGCATTTGGCCTTCTGAACTGGTGAGAAAATGAAGTACAATAAGAAAcaagatgaaaaaatatatatatacaaatgttCATTTGGCTTAAATACTGGAAATGCTTAGTCCATGGATCCATCACAGAGTGGGGGAAATAGCTTATAACAGTTTCTTTACTGTACACTTTCTTTAGGTACAGATCCTCTCCGTCATGGGCCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU57809 True 1271 lncRNA 0.39 2 15223929 15225229

Neighbor

gene id symbol gene type direction distance location
LOC103026677 LOC108438650,LOC108270818,LOC107723066 coding downstream 18678 15174059 ~ 15205251 (-)
LOC103025036 chrna4,LOC446090,LOC107594120,LOC105920314 coding downstream 114605 15098372 ~ 15109324 (-)
LOC103024303 txlng,LOC107665847,LOC107602792,LOC107723067 coding downstream 162572 15051852 ~ 15061357 (-)
zrsr2 zrsr2,LOC107729896,LOC107602790 coding downstream 178658 15040101 ~ 15045271 (-)
LOC103022633 npepps,LOC107718863,LOC107674532,LOC107680533,LOC107753845 coding downstream 195310 15005407 ~ 15028619 (-)
LOC103028830 LOC108438687 coding upstream 33340 15258569 ~ 15265535 (-)
mast3 mast3 coding upstream 84347 15309576 ~ 15344628 (-)
LOC103031895 NA coding upstream 256206 15481435 ~ 15483402 (-)
tmem259 tmem259,LOC107602804,LOC107723848,LOC107656092 coding upstream 563486 15788715 ~ 15804336 (-)
LOC103037800 slc1a8a,LOC108437258,LOC107753804,LOC107674556,LOC105011368,LOC105896421,LOC108271187 coding upstream 1140880 16366109 ~ 16383428 (-)
G42831 NA non-coding downstream 51608 15169585 ~ 15172321 (-)
G42835 NA non-coding downstream 75138 15148279 ~ 15148791 (-)
G42834 LOC108438649 non-coding downstream 77087 15143446 ~ 15146842 (-)
G42830 bt3l4,btf3l4,LOC103026176,LOC107655993,LOC105028135,LOC107562065 non-coding downstream 82536 15138328 ~ 15141393 (-)
G42746 rtel1 non-coding downstream 137955 15083476 ~ 15085974 (-)
G42844 atp5b,LOC103392222 non-coding upstream 29956 15255185 ~ 15256472 (-)
G42882 NA non-coding upstream 152021 15377250 ~ 15378746 (-)
G42895 NA non-coding upstream 191691 15416920 ~ 15417702 (-)
G42913 NA non-coding upstream 288199 15513428 ~ 15598152 (-)
G42915 wdr18,LOC106613619 non-coding upstream 298281 15523510 ~ 15612104 (-)
G42850 NA other downstream 5107 15217957 ~ 15218822 (-)
socs7 socs7 other downstream 257129 14949884 ~ 14966800 (-)
G42712 LOC108438667,LOC105021477,LOC107674533 other downstream 362591 14860554 ~ 14861338 (-)
G42661 NA other downstream 697039 14462673 ~ 14526890 (-)
G42516 NA other downstream 884758 14335930 ~ 14339171 (-)
G42894 NA other upstream 190426 15415655 ~ 15415999 (-)
LOC111192556 NA other upstream 200158 15425387 ~ 15489721 (-)
G43173 LOC108437262 other upstream 1473720 16698949 ~ 16701352 (-)
smim7 smim7,LOC107568062,LOC107703137,LOC107658516 other upstream 2017135 17242364 ~ 17244709 (-)
LOC103042724 NA other upstream 4394194 19619423 ~ 19622153 (-)

Expression


Co-expression Network