G42686


Basic Information

Item Value
gene id G42686
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 14668729 ~ 14669342 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU57537
atcTCCATTAATTACTGGCTTTTACCTTACTCTTGTTCACACTTTCCCTTTTAGTGTAACTGCTTCCCCATGGCTATAACTAATCTCTTATAGCCAAATTAGCTTTTACAAACACCTAGTTTACCACTAGACACACACTAtgtctcatgcacacacacaaacgcacacaacTTCACCCATACAAgtacacataaacaaactcaaacacCTCAATTCTGCACCATCATTGTacagaccatattttactgcttcacagcccaaagctgctgctttaaacGCACCTGCTGTTAAACCTACCACTGAATGCTTCCTGCATATCCTCTTATATTGTATTGATAGTACtacatagataataaataaggaacaaacatttggaaatataTCTGAATCATGTTTATTATCATTGCTCCATGCAAACTTTTGATGATCAGCTGCTCTATTCTCCGATTCATCTCCACACTGATTGATAGAATATCAGGGCCCAAAGTTTTACACTCTGCACAAACTACCCATAATGTAGCTTCTGTGTCAGGAATGGGTCCATGTTGATGTActgggctttcttgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU57537 True 567 lncRNA 0.38 2 14668729 14669342

Neighbor

gene id symbol gene type direction distance location
polrmt LOC101483880 coding downstream 5624 14545942 ~ 14663105 (-)
LOC103043174 lpl,LOC108271131,LOC107588078,LOC107715086 coding downstream 227366 14431281 ~ 14441363 (-)
LOC103042854 LOC103042854,LOC108424983 coding downstream 247621 14412980 ~ 14421108 (-)
LOC103040192 NA coding downstream 520263 14145135 ~ 14148466 (-)
stil NA coding downstream 595285 14053523 ~ 14073444 (-)
LOC103026498 NA coding upstream 3498 14672840 ~ 14675540 (-)
LOC103031381 LOC103031381,LOC108270801,LOC108438672,LOC107392486,LOC107090776,LOC102787562,LOC101476066 coding upstream 16039 14685381 ~ 14688758 (-)
LOC103032543 NA coding upstream 59143 14728485 ~ 14731043 (-)
LOC103027066 NA coding upstream 63356 14732698 ~ 14756595 (-)
LOC103045012 LOC108438669,LOC107718874,LOC108270845,LOC107674537 coding upstream 98009 14767351 ~ 14787939 (-)
G42674 NA non-coding downstream 2364 14616416 ~ 14666365 (-)
LOC103043998 NA non-coding downstream 209111 14456847 ~ 14459618 (-)
G42519 NA non-coding downstream 322421 14345821 ~ 14346308 (-)
G42500 mrpl54,LOC102788358 non-coding downstream 359105 14306723 ~ 14309624 (-)
G42465 NA non-coding downstream 534336 14131715 ~ 14134393 (-)
LOC103044803 NA non-coding upstream 129936 14799278 ~ 14827866 (-)
G42714 NA non-coding upstream 164834 14834176 ~ 14858433 (-)
G42711 NA non-coding upstream 197823 14867165 ~ 14868723 (-)
G42722 NA non-coding upstream 278278 14947620 ~ 14947849 (-)
G42746 rtel1 non-coding upstream 414134 15083476 ~ 15085974 (-)
G42661 NA other downstream 141839 14462673 ~ 14526890 (-)
G42516 NA other downstream 329558 14335930 ~ 14339171 (-)
fam32a fam32a,LOC107757479 other downstream 362753 14303540 ~ 14305976 (-)
tm2d1 tm2d1,LOC107669801,LOC107653653,LOC107715116,LOC106574044,LOC107731529 other downstream 1505924 13142373 ~ 13162805 (-)
nr2c2ap nr2c2ap,LOC107554809,LOC107687739,LOC107728548 other downstream 2895627 11767698 ~ 11773102 (-)
G42712 LOC108438667,LOC105021477,LOC107674533 other upstream 191212 14860554 ~ 14861338 (-)
socs7 socs7 other upstream 280542 14949884 ~ 14966800 (-)
G42850 NA other upstream 548615 15217957 ~ 15218822 (-)
G42894 NA other upstream 746313 15415655 ~ 15415999 (-)
LOC111192556 NA other upstream 756045 15425387 ~ 15489721 (-)

Expression


Co-expression Network