G42500 (mrpl54,LOC102788358)


Basic Information

Item Value
gene id G42500
gene name mrpl54,LOC102788358
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 14306723 ~ 14309624 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU57223
aggaatatttatttttaagagagcAAATGTTGATCAATCCTGGCTTGTGTAACTGAGCTTCATAAACAGTTCAAAAGTCCAGGCCTGTCCAATAAAGGACAACTAAAGTTCCTGCTGGACAAGCTTCCACTTCTGTCCAAGTTTATACAGCTTAGTGAAAAATCCACCATTGTGAAATACAACCAGTGCACTACCAAATACTGCACGCTATCACAGGTACTTGTGGTCTTGACATTGCAGATTTACAGGAAGCTGAAATCCAGACATGTTTTGGGGAAAGTAGTGGAACGCTCAACGAGGAACCAAATTCCTAAAATCAGCCAGTTCCTTTCCACCAAGAGTCACTTAAATCCTGGTCTTATCAGGGCGTGTAGCTCTTTGTCTCTCAGAACTTTTTACCCTTGTGTAATCTGTTAAACCGCCATATGTTCTCCTTTCGTAGACGTTTCCAGTATTCGTGACTCTCTGAATCCATTTCTTCCAGTTTTTTGGCAGGGCCAAGGTTCAGCTGAAACAGCCATTCTGGATATTCATCTTTGGGTTTAATTGGCGGATCTTCACCCTGTTTGAAGATGTTTACTCCTACAGCATGTGATACGAGTTTCTCTGGATCTTTGCACACCTCTGGACCCTTCTGCACATCCTTCATCATGCCTTTTCCCTTCCCTTTAGCAGCGACTTTCTTAGCGTATCCGCGAACACCCACTGAACCTCTCAGACCCGCTAGAGCACAGGTTTCTGCGTGtgaattaaaaacacagagattTAGAGCAGCTTTTACAGGATTCGTTAAACTCCTCAGCGCCATGGTTCATACAGCAGCCTGCCACCATGCTGTACAGCAGCTTCCGCCCAGCACTGAGCATGCG
>TU57224
aggaatatttatttttaagagagcAAATGTTGATCAATCCTGGCTTGTGTAACTGAGCTTCATAAACAGTTCAAAAGTCCAGGCCTGTCCAATAAAGGACAACTAAAGTTCCTGCTGGACAAGCTTCCACTTCTGTCCAAGTTTATACAGCTTAGTGAAAAATCCACCATTGTGAAATACAACCAGTGCACTACCAAATACTGCACGCTATCACAGGTACTTGTGGTCTTGACATTGCAGATTTACAGGAAGCTGAAATCCAGACATGTTTTGGGGAAAGTAGTGGAACGCTCAACGAGGAACCAAATTCCTAAAATCAGCCAGTTCCTTTCCACCAAGAGTCACTTAAATCCTGGTCTTATCAGGGCGTGTAGCTCTTTGTCTCTCAGAACTTTTTACCCTTGTGTAATCTGTTAAACCGCCATATGTTCTCCTTTCGTAGACGTTTCCAGTATTCGTGACTCTCTGAATCCATTTCTTCCAGTTTTTTGGCAGGGCCAAGGTTCAGCTGAAACAGCCATTCTGGATATTCATCTTTGGGTTTAATTGGCGGATCTTCACCCTGTTTGAAGATGTTTACTCCTACAGCATGTGATACGAGTTTCTCTGGATCTTTGCACACCTCTGGACCCTTCTGCACATCCTTCATCATGCCTTTTCCCTTCCCTTTAGCAGCTGCTAAAGTCACAACACAAAACGAAACATCAATTAAACAGACCCAGTATATTTAAGAAACAAGTGcgaatgctgtttgtttttgctgcttTGGAAAACCGATTCAATGgaataatcatacatttattttcctggaattatataaaaatacctTTTA

Function

symbol description
mrpl54 Predicted to be a structural constituent of ribosome. Predicted to be located in mitochondrion and ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL54 (mitochondrial ribosomal protein L54).

NR:

description
39S ribosomal protein L54, mitochondrial isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU57223 True 869 lncRNA 0.45 3 14306723 14309624
TU57224 False 832 lncRNA 0.40 2 14308706 14309624

Neighbor

gene id symbol gene type direction distance location
LOC103040192 NA coding downstream 158257 14145135 ~ 14148466 (-)
stil NA coding downstream 233279 14053523 ~ 14073444 (-)
rc3h1 rc3h1,LOC108429496 coding downstream 254675 14026773 ~ 14052048 (-)
serpinc1 serpinc1 coding downstream 289738 14005926 ~ 14016985 (-)
dph5 dph5,LOC107715097,LOC106613590 coding downstream 393511 13892691 ~ 13913212 (-)
LOC103042854 LOC103042854,LOC108424983 coding upstream 103356 14412980 ~ 14421108 (-)
LOC103043174 lpl,LOC108271131,LOC107588078,LOC107715086 coding upstream 121657 14431281 ~ 14441363 (-)
polrmt LOC101483880 coding upstream 236318 14545942 ~ 14663105 (-)
LOC103026498 NA coding upstream 363216 14672840 ~ 14675540 (-)
LOC103031381 LOC103031381,LOC108270801,LOC108438672,LOC107392486,LOC107090776,LOC102787562,LOC101476066 coding upstream 375757 14685381 ~ 14688758 (-)
G42465 NA non-coding downstream 172330 14131715 ~ 14134393 (-)
G42430 s1pr1,LOC107715096,LOC107592715,LOC107669844 non-coding downstream 321662 13981970 ~ 13985061 (-)
G42415 NA non-coding downstream 440384 13861654 ~ 13866339 (-)
G42414 NA non-coding downstream 467715 13837030 ~ 13839008 (-)
G42411 NA non-coding downstream 472524 13830953 ~ 13834199 (-)
G42519 NA non-coding upstream 36197 14345821 ~ 14346308 (-)
LOC103043998 NA non-coding upstream 147223 14456847 ~ 14459618 (-)
G42674 NA non-coding upstream 306792 14616416 ~ 14666365 (-)
G42685 NA non-coding upstream 358101 14667725 ~ 14670352 (-)
G42686 NA non-coding upstream 359105 14668729 ~ 14669342 (-)
fam32a fam32a,LOC107757479 other downstream 747 14303540 ~ 14305976 (-)
tm2d1 tm2d1,LOC107669801,LOC107653653,LOC107715116,LOC106574044,LOC107731529 other downstream 1143918 13142373 ~ 13162805 (-)
nr2c2ap nr2c2ap,LOC107554809,LOC107687739,LOC107728548 other downstream 2533621 11767698 ~ 11773102 (-)
borcs8 borcs8,LOC107599453,LOC107554813,LOC107728595 other downstream 2544462 11756447 ~ 11762261 (-)
mef2b mef2b other downstream 2574827 11720126 ~ 11731896 (-)
G42516 NA other upstream 26306 14335930 ~ 14339171 (-)
G42661 NA other upstream 153049 14462673 ~ 14526890 (-)
G42712 LOC108438667,LOC105021477,LOC107674533 other upstream 550930 14860554 ~ 14861338 (-)
socs7 socs7 other upstream 640260 14949884 ~ 14966800 (-)
G42850 NA other upstream 908333 15217957 ~ 15218822 (-)

Expression


Co-expression Network