dph5 (dph5,LOC107715097,LOC106613590)


Basic Information

Item Value
gene id dph5
gene name dph5,LOC107715097,LOC106613590
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 13892691 ~ 13913212 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015603322.2
GTCGTAAAAAAGGAGCAGCTTTACTGCAAGCGTGATGCCGGTTGCTCCTGCAGGGGAACACGTGAGAATCAGTAGAAATCAGGAACAAATCAGCATTAAAACAGGGTTAAATCTGAATTAAACCGGGTTTACGCTTCTAAATATATGTTCTATAGGCTTTAGACAGACTGTACTTAGATCATGTCATAAGAGACAGGTTTCTGGTATATTAAGGGGAGTGTTAAACAGTTAGCactagctttagcattagcgctgtAATTCAGCAGCTGCTCTGTTTGCCTTATTTTCCTCCTGGAAGTTAAATCAGTTAAAAGTCAGAAATGCTGTATTTTATCGGTCTTGGTCTCGGGGACGCGAAGGACATCACAGTGAAGGGGTTAGAGATAATTAAAGGCTGTAGTCGGGTTTATTTGGAAGCCTACACCTCCATCCTGACTGTGGGGAAAGAAGCTCTGGAGGAGTATTATGGGCGTGAGCTGCTGCTGGCAGACAGAGACATGGTGGAGCAGGAGGCTGATGAAATCCTGAAGGGAGCTGATGTTAGTGATGTTGCCTTCCTGGTGGTGGGAGATCCTTTTGGtgcaacaACCCACAGTGACCTTGTTCTGAGAGCAGTGAATGCTGGGATCCATTACCGGGTTATCCACAATGCCTCCATCATGAATGCGGTGGGCTGCTGTGGACTTCAGCTGTACAACTTTGGTGAGACTGTGTCCATTGTGTTCTGGACGGACACCTGGAAACCAGAGAGCTTCTATGATAAGATCAAGAGGAACAGAGATATGGGCATGCACACACTCTGTCTTCTTGATATCAAAGTTAAAGAGCAGTCCATGGAGAATCTAATGAGGGGTCGTAAGATTTACGAGCCGCCCAGGTTCATGACCGTGGCTCAGGCAGCCGAGCAGCTCCTGGAGATAGTGCAGAACCGCAGGGACAGAGGAGAGGAACTGGCGATCACTGAGGAGACGGTGTGCGTGGGTCTGGCACGGGTGGGAGCTGAGGACCAGGCCATTCGGGCGGGGTCGTTACGAGAGATGGCTTCGTGTGACCTGGGAGGACCACTGCACTCCATGATCGTCTCTGGACATCTTCATCCGCTGGAGGTGGACATGCTGAAGCTGTTCAGTGGCTGTTCTGAGGGTCTGAAGAGCCTGAAGATGACCGACAGCTCTACGTACATCTCCTGAGAACCTCAGAAGAACTTTCAGAAACCTatagaaacaagaaaaacaggaacaggaactTTACAGGTCGTTGAAAAAAACGAAGGGAATTAAAtgtttctaattattttttaatgtttactgCAGGGTCCATGCTGGATCTTCCCCTTCAGGGCAGCAAGCCATTACATCAGGTGGTCTGTGTGAACTCAAGTACTCCAGCACACGAGGTAAAAAGGAAACCATACAAATTACATAATTGTTATTGCAGGACAAAAATATCCGCTCCACTCCCGAATCCCCAAGGACCCGTCAGGTCAAGGTTCTGTTTCATTACACTGTTTGTGTTCGGGCCACTTAATTAAGTTGTATGTGTGGCCGTAGACCGTATCGTATGTCAGAAAATGGAAGGACAGGATTACAAAGGTtattgaggggaaaaaaaaaaatcatctgggTTAAATTAGTGCCTCTGAAAAGTGAAGCTCTCCTGTAATTTGAAGCCGAGCTGTTGAACAGCATTGGCTTTCTAAATGCAACAAATGTGTTCAATATGAATGccaaaacatttgaacatactgaacttttttttttttatgttcctgTCTGCCTGAACAAGGCCTCGTCGTGTTGCTTTGGAACATCGTTTGATTGctacaataaaaaagaagcatATTTTATTACTGCTGGGGTTCTACAAGGCCCAGTCCAACA

Function

symbol description
dph5 Predicted to enable diphthine synthase activity. Predicted to act upstream of or within methylation and peptidyl-diphthamide biosynthetic process from peptidyl-histidine. Orthologous to human DPH5 (diphthamide biosynthesis 5).

NR:

description
diphthine methyl ester synthase-like isoform X1

GO:

id name namespace
GO:0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine biological_process
GO:0032259 methylation biological_process
GO:0004164 diphthine synthase activity molecular_function

KEGG:

id description
K00586 DPH5; diphthine methyl ester synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015603322.2 True 1880 mRNA 0.46 7 13892691 13913212

Neighbor

gene id symbol gene type direction distance location
dbt dbt,LOC107715105,LOC107588055,LOC107669841,LOC107653638,LOC107592709 coding downstream 199325 13683295 ~ 13693366 (-)
LOC103036543 NA coding downstream 209491 13680717 ~ 13683200 (-)
lrrc39 lrrc39,LOC107592708,LOC107653639 coding downstream 213607 13672906 ~ 13679084 (-)
LOC103034756 osbpl1a,LOC108429508,LOC108271178,LOC107592705 coding downstream 227804 13630221 ~ 13664887 (-)
ankrd29 ankrd29,LOC107731532,LOC107653646,LOC107715109,LOC107669827 coding downstream 341303 13537625 ~ 13551388 (-)
serpinc1 serpinc1 coding upstream 92714 14005926 ~ 14016985 (-)
rc3h1 rc3h1,LOC108429496 coding upstream 113561 14026773 ~ 14052048 (-)
stil NA coding upstream 140311 14053523 ~ 14073444 (-)
LOC103040192 NA coding upstream 231923 14145135 ~ 14148466 (-)
LOC103042854 LOC103042854,LOC108424983 coding upstream 499768 14412980 ~ 14421108 (-)
G42415 NA non-coding downstream 26352 13861654 ~ 13866339 (-)
G42414 NA non-coding downstream 53683 13837030 ~ 13839008 (-)
G42411 NA non-coding downstream 58492 13830953 ~ 13834199 (-)
G42375 NA non-coding downstream 97374 13791891 ~ 13795317 (-)
G42356 NA non-coding downstream 156253 13699990 ~ 13736438 (-)
G42430 s1pr1,LOC107715096,LOC107592715,LOC107669844 non-coding upstream 68758 13981970 ~ 13985061 (-)
G42465 NA non-coding upstream 218503 14131715 ~ 14134393 (-)
G42500 mrpl54,LOC102788358 non-coding upstream 393511 14306723 ~ 14309624 (-)
G42519 NA non-coding upstream 432609 14345821 ~ 14346308 (-)
LOC103043998 NA non-coding upstream 543635 14456847 ~ 14459618 (-)
tm2d1 tm2d1,LOC107669801,LOC107653653,LOC107715116,LOC106574044,LOC107731529 other downstream 729886 13142373 ~ 13162805 (-)
nr2c2ap nr2c2ap,LOC107554809,LOC107687739,LOC107728548 other downstream 2119589 11767698 ~ 11773102 (-)
borcs8 borcs8,LOC107599453,LOC107554813,LOC107728595 other downstream 2130430 11756447 ~ 11762261 (-)
mef2b mef2b other downstream 2160795 11720126 ~ 11731896 (-)
LOC103041480 NA other downstream 2213672 11618444 ~ 11679019 (-)
fam32a fam32a,LOC107757479 other upstream 390328 14303540 ~ 14305976 (-)
G42516 NA other upstream 422718 14335930 ~ 14339171 (-)
G42661 NA other upstream 549461 14462673 ~ 14526890 (-)
G42712 LOC108438667,LOC105021477,LOC107674533 other upstream 947342 14860554 ~ 14861338 (-)
socs7 socs7 other upstream 1036672 14949884 ~ 14966800 (-)

Expression


Co-expression Network