G42465


Basic Information

Item Value
gene id G42465
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035901.1
NCBI id CM008304.1
chromosome length 40584741
location 14131715 ~ 14134393 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU57185
TTTTATTCTATGAAACAAGGAACCACATACTCAGCATTGGCATTTTTTTCTAGTGACTACCAATGTTCAATGcaatctttaaaatgttttcagttACACATCTGGAgttattcatgttttataggACAAATAGAGCAGAtgtaatatacattttacatgtactttgctttttaaaaatgcatttcagTATGACGATTAatcattattgtttttcttttttttctgttgtagtTCTTCTGTTCTTATCTACAGAGGCGAGGGACTAAGGCAGGCCGAAAGGAACGCGCTCCACTTCAGAACTCTGGGTTATTTATCTCGATGCATATGTCATGTTTAATACGAAGACAGGCAATTTAAAAATGCTTacatacaaaaacaaagaataaaacaataacagaACATCAAAAGTGGATGTAACGAGTCTAAATGGATTtacagacaattttttttaacacacaaataaaaatatacataaactattattattattgcacaaTGGAGGTATCAGAGACGAGTACAGCATGTGTTGACACCTGTGAGacgtttgaaaatgttttaagcaTGAGCCGAAACTCGGAAACTGTTCTTCCGACACGAgaaaacaatttaatattttatattgacttaTTGATTAGAAGGATTTCTGCACACCTTTGCAGTGCTTTTAGTAGAGGGAGAcctgtaacagggtggtagacCAGAAAACGAGCCCAGCGTGTTCCTGGGGGTTCAAAGTCAATAAAGTGAAGTAGTAAAGTAACActgttaaaattatattaagcaatgttaaaaaaaataaaaaaattccacattgtcaccttacaaccacaaacataaagtgtcagtctgtattattttgtttctaaactgaaagcagaagcatttctgagtggagaagagataaaatattgtgtttaatggtaccagtgtactgaaacgaccatccctgATAAgcctaaaaatataataattccaAAAACTTGGGTGTGGGGTTGCTTTTCACGGGAGTTTTTCTGGCCACATCACaagtctttacgtacttacatcacacgtacagcctctaaaagaggatccagcttAGTTTTACTGAAtacgagcggctggtggagcaatggagacttcagaaggggaaactcagagctcagtagctcattcagtttctgactgagcgctctcttttttctctctctctgactgaacataacctggaatctgaaaggagaccacatcacacctgcccaattaaaaataattcttcCGCATTCTCCGTGCAATTatccattctcaccagagagggccctaagtcccccaaatcccaaatttacgcacatcagctttaaatctattttattaagatttttaaagaagtgacagaccaacacaaagtggcacataattgtgaagtggaacaaaaatgatacatggttttcaaaatctgaaaagtgtgacatttAAAAGTTTTCAGCCCCCTTAACTATGAAAGCCCTAAATACATTCCAGTGCCatcaattgccttcagaagtgaCTTAATTAGTTATCATATGcaagctgtgtgtaatttagtctccaAATCTCATAAATACAAtactgttctgtgaaggcctcagtggttcaTACACATGCAAAGTGTGGTGAAATAGTAACACAATACACACccctgtgaaacatggtggtggtagcatcatgctgtagagatgccTTTCTTCCGCAGGGACAGGGACGCTGGTCAGAGTTAATGGGAAGATGAATGgagctacagtaaatacagggcaatcctggaaggctgcaaaagacttgagactgggaagatttcccttccagcaagacaatgaccctaaacatacagccagagctacagtggaattaaaggtttagatcaaagaacaTTATACATGTGTTTAGAAtagcccagtcaaagtcctgacctacaTTTCACTTAACATCTGTGGTGAGACATGATCATTTATTTTCAACCTGGCTGAGTTTGagcttttttgtaaaaaaagaatgggcaaaaaatcTCTCTAGTCTTTAAAGGTGCAAAACTGGTAGAGACATAGCCCAAAACAATCAGCAGCTGCAATTGCAAAGACAGGCGGCTCTACTAAGcattgaaaaccatgtatctttttatctttttgttccacttcacaattatttgcttctttttgtgttggtctatcacttaaaatctcaataaaatgcattgaagtttgtggttgtaaggtgacaaaacataaaaaacaaaagaagttcaaagggtatgaatacttttgcaagctcAAAAACAAAAACCTAAGGAAATAGCATCTATCTGTCACAGCTTTTAGAATCAATTACTCTGAACAGCATAACCTTCAGCTTCAGGTTATGAATCCATAAGCGTGCTAATTCACAGTCACACAAAGCCCTtcattaattaaagtaaaaacaaaccaaaaaaagtaaatgatgaaGGTTGTAAGCTTGGGTGAGAGAGATGAGGTATAAGAACGTATGTACGACTAAGTGAGAACTAACTCAAATTTCAGGACATGAGTAAGTTACTACCTGAAATGACGCATGACAAGCGAGACCACAGGTTTGAATCAGGCAGGCAGTACCACCAGCAGAAGCTTcaagtaaaatacagtacagatcGGTTTCAGCAACGTAACCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU57185 True 2659 lncRNA 0.37 2 14131715 14134393

Neighbor

gene id symbol gene type direction distance location
stil NA coding downstream 58271 14053523 ~ 14073444 (-)
rc3h1 rc3h1,LOC108429496 coding downstream 79667 14026773 ~ 14052048 (-)
serpinc1 serpinc1 coding downstream 114730 14005926 ~ 14016985 (-)
dph5 dph5,LOC107715097,LOC106613590 coding downstream 218503 13892691 ~ 13913212 (-)
dbt dbt,LOC107715105,LOC107588055,LOC107669841,LOC107653638,LOC107592709 coding downstream 438349 13683295 ~ 13693366 (-)
LOC103040192 NA coding upstream 10742 14145135 ~ 14148466 (-)
LOC103042854 LOC103042854,LOC108424983 coding upstream 278587 14412980 ~ 14421108 (-)
LOC103043174 lpl,LOC108271131,LOC107588078,LOC107715086 coding upstream 296888 14431281 ~ 14441363 (-)
polrmt LOC101483880 coding upstream 411549 14545942 ~ 14663105 (-)
LOC103026498 NA coding upstream 538447 14672840 ~ 14675540 (-)
G42430 s1pr1,LOC107715096,LOC107592715,LOC107669844 non-coding downstream 146654 13981970 ~ 13985061 (-)
G42415 NA non-coding downstream 265376 13861654 ~ 13866339 (-)
G42414 NA non-coding downstream 292707 13837030 ~ 13839008 (-)
G42411 NA non-coding downstream 297516 13830953 ~ 13834199 (-)
G42375 NA non-coding downstream 336398 13791891 ~ 13795317 (-)
G42500 mrpl54,LOC102788358 non-coding upstream 172330 14306723 ~ 14309624 (-)
G42519 NA non-coding upstream 211428 14345821 ~ 14346308 (-)
LOC103043998 NA non-coding upstream 322454 14456847 ~ 14459618 (-)
G42674 NA non-coding upstream 482023 14616416 ~ 14666365 (-)
G42685 NA non-coding upstream 533332 14667725 ~ 14670352 (-)
tm2d1 tm2d1,LOC107669801,LOC107653653,LOC107715116,LOC106574044,LOC107731529 other downstream 968910 13142373 ~ 13162805 (-)
nr2c2ap nr2c2ap,LOC107554809,LOC107687739,LOC107728548 other downstream 2358613 11767698 ~ 11773102 (-)
borcs8 borcs8,LOC107599453,LOC107554813,LOC107728595 other downstream 2369454 11756447 ~ 11762261 (-)
mef2b mef2b other downstream 2399819 11720126 ~ 11731896 (-)
LOC103041480 NA other downstream 2452696 11618444 ~ 11679019 (-)
fam32a fam32a,LOC107757479 other upstream 169147 14303540 ~ 14305976 (-)
G42516 NA other upstream 201537 14335930 ~ 14339171 (-)
G42661 NA other upstream 328280 14462673 ~ 14526890 (-)
G42712 LOC108438667,LOC105021477,LOC107674533 other upstream 726161 14860554 ~ 14861338 (-)
socs7 socs7 other upstream 815491 14949884 ~ 14966800 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G121616 NA non-coding NC_048566.1 CM023220.2 21475814 ~ 21548364 (+)
striped catfish (Pangasianodon hypophthalmus) G119050 NA non-coding NC_047601.1 CM018547.1 21929080 ~ 21932246 (-)
tiger barb (Puntius tetrazona) G94941 NA non-coding NC_056711.1 CM032080.1 18916245 ~ 18916650 (-)