G79642


Basic Information

Item Value
gene id G79642
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 11533578 ~ 11535398 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU107311
AtgtatttctaagattatcttgaatattacaaaactgtttgtgggcaaaatatatatattacatttattgtgattcaattgtaagattgttgtttcctgaatttatcctcacaaactggtaTGCTGAAgaatgtattttgatccactgtttagttgagttttcttttggtttggtcTATTAGAAAAATAGACCACTAGCTGAAGCATGGTGAccatgtgggggggggggggtttatggccctttgtgaataAGATCATCTTCCCTgccaaagtttgaaattgctcctagaccaatcaaaacacagacatttgggccACAGGGCCAATCGTAGCTCAagggccaaacaggccacagagactaatagttaaactgggcagacacagttcagtttccagttcagtttgagttgagttttaGAGTTCAGTTCAGGGCAGTTGGAAGAGAAGCAGTTCAGTTGAGTTGGAGTTGGAGAAGCAGTGGGAGAAGATGGGTTGAAGAAAGCAGTTGAAGAGAGAAGTGGAGGAGAGGTTCAGGGAGAAGTTAGAGTAGAGAGGTTAGGAAGCCCAGAGATGAAGAAAGGATAGACTGTTAGTTTAGTCATCTtagttagttttcttagactagtgcatttaatcttcttcaagtatattaatattagctatcctagttaaaatatctaaggttattttacaatctacaaagccaagcattattccatctaagtttagctaaagtacagctgaaaaaGAGATCCGCCAGATCCAACCCAGAAACCTGCGGTCCGGAGGCCACCAGCAAGCCACCTGAGAGTGAAGGGATTTACCCTGTGGGTTCTAAtggggctccgtgctgacacaggaagtcaaACCATCCTGCAGACAGGCTCACGTGATCCTTTTTCGGGGTGAAGCAGCAGACGACCAACCCAGACGGACGTCACCAAGGCCCACTTCAACAcctcagacaccaggtattaaaccactgagcccgCTACACCTGTGAATGCTGACCTCGTTTCGGACTTGAAGACAATTATCCAACGTGGTGTCTATCCTTTGAGCGGGACAGAGTGCGTGGGTCGCATTTGCTCCCTGCTTCCATCATCCTCCTCACCAGGATCATAATCATTTTCGCCATCATTATAATTATCTTGCCATCATATTCATCTTGGCCATCAGCATCTTCACCTTTGTAGTCGTTGCCTCCATATCTCTGCCACCATCGCTGCTCTGTCTATTGTATTGTGCCATTGTCATCACCACGATCCTTGGCGCCCTCATCATACTCACCTCCATCATCACCATCGCATGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU107311 True 1313 lncRNA 0.44 2 11533578 11535398

Neighbor

gene id symbol gene type direction distance location
ttc27 ttc27,LOC107689788 coding downstream 170370 11220363 ~ 11363208 (-)
LOC111193129 NA coding downstream 324894 11205127 ~ 11208684 (-)
rasgrp3 rasgrp3,LOC107744459,LOC107670874,LOC107689794,LOC106576952 coding downstream 597315 10822882 ~ 10936263 (-)
LOC103040295 LOC108430229 coding downstream 734776 10790644 ~ 10798802 (-)
LOC103026670 LOC103026670,LOC108430189 coding downstream 815738 10715367 ~ 10717840 (-)
pdzd8 pdzd8 coding upstream 107192 11642590 ~ 11808582 (-)
rlf NA coding upstream 590429 12125827 ~ 12150716 (-)
yipf4 yipf4,LOC107744423,LOC107670878,LOC106576945 coding upstream 984065 12519463 ~ 12524837 (-)
LOC103024740 LOC103024740,LOC108413681 coding upstream 1195228 12730626 ~ 12735104 (-)
LOC103046657 NA coding upstream 1286517 12821915 ~ 12835548 (-)
G79633 NA non-coding downstream 17913 11515089 ~ 11515665 (-)
LOC111193138 NA non-coding downstream 158198 11372079 ~ 11375380 (-)
G79602 NA non-coding downstream 315670 11211051 ~ 11217908 (-)
G79533 NA non-coding downstream 898485 10634500 ~ 10635093 (-)
G79515 NA non-coding downstream 976120 10506347 ~ 10557458 (-)
G79644 NA non-coding upstream 395 11535793 ~ 11536344 (-)
G79657 NA non-coding upstream 21197 11556595 ~ 11556956 (-)
G79658 NA non-coding upstream 21567 11556965 ~ 11558802 (-)
G79664 NA non-coding upstream 28116 11563514 ~ 11563855 (-)
G79786 NA non-coding upstream 129738 11665136 ~ 11669405 (-)
ltbp1 ltbp1 other downstream 349637 10941687 ~ 11183941 (-)
G79582 NA other downstream 603982 10928640 ~ 10929596 (-)
LOC103027264 NA other downstream 1196862 10294488 ~ 10336716 (-)
LOC103027354 LOC103027354,LOC108438753 other downstream 1461694 10034686 ~ 10071884 (-)
LOC111193185 stac,LOC107715935,LOC107670884 other downstream 2878561 8650628 ~ 8655017 (-)
G79865 NA other upstream 434043 11969441 ~ 11971939 (-)
G79945 NA other upstream 622188 12157586 ~ 12192028 (-)
ncmap NA other upstream 799001 12334399 ~ 12372804 (-)
edaradd edaradd other upstream 1049764 12585162 ~ 12613731 (-)
LOC103046962 ptena,LOC108411875,LOC107670848,LOC101171856,LOC105900832,LOC105940225,LOC104929647,LOC103387686 other upstream 1336591 12871989 ~ 12912395 (-)

Expression


Co-expression Network