G80864


Basic Information

Item Value
gene id G80864
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 15598679 ~ 15620782 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU108907
CGTTTTATTGGAGGACAGTTTGGGTACTTGGCGTTGATTGTAATACAGTTGTTGCctaatttttttctgtgtgcAAACGGTGGGAGGAATGGCACTGGAATGGTCCGGGAACGGCCCAAATGGAACCGGAAACACAAAGCGACGAGCGGCAGGATTCCCAGCGGCCTTGTCCTGCCTCGAAGGCCCAACGACAAGAGTAGCGTTCAGAAACCAGAGTCTGTCCACATCGCTTAAATCCAGTTACTCCCAAAATAAACCTTTAGAATCGCTTTAAAACCTTTTCCATGTATGTCCCTCTGACTAGCTTCAGACTCTGCCtgcctttcaaataaaaaacaaaacgaacAGGAACAGCTGAATAACACCTTTATTTAACTTCATAAGCTTAATGTAGCATTAGCTAGAGTATAAAGTGGCTATACATAGTGTATTAGCTAACAAGAGCATAGCTGCAACGCTAACAGGTTTTGAGGTGAGGACCTGTGTGTTTACAGACGCGCCGTAACACACTGCGGCgaagctgctgcttctgctgcgcTCGACAGGTCTGCGCACAAGGGTGTAGAAGAGTTTGTATGTgcaattgtgtgtgtttgtgctctgCTAACAGAACCCATGTGCATGCTAACATGTCAAAGCCAATGACCTCGCTTCTGTCTTAACATGCATGGCTGATGGAAGCTAAAACGCTAGCATCGAGAAATAAGGCTCCTATATCGGACCAAAGATCAGTCGCCGGTAGACACATCTGCACTGAAGTAAACAGCTAGGCTACGCTGGTTAATTTTGGTGGTTTTGGTTCATCTtctgaccaacatgaccaggcTAGAGGACCAGCATGACTAGTGTGATCAATGTGACAAGCTGGAAGATGAGCTATGTCAATATGATCCACCTAGTTGTTTGGCACAACCTGCATTACTCAGCCAGTCATCTAGTAGCATGTACACGCTCATTAGCCTACATGACCAAGCCAGCCAATTGACATGATTAGCCCAACCAAAATAACAAGCTGGACTAAGCTAGTCAACCAACAAGGCCAAGATATTGTTGTGCATGACTAAGCCCATTAACTAGCATTTCCATGCTAGCTGACTAGCATAAACAGCTTAACCAAGACTAAATAATAGTCAGGCAGATACCAGGTATGTTTATACCCAACTTAGACCTTCTAAAACCAGCAAGCACCAAAAGCTGGTGTTGTTTAGGTATCTCAGCGCAGAAGTTGTGtttgaaacttaaaaaaaagaggcagagaaaACAGCAATCTCGTTTTTTATTCTCATTATTTTTTCGCTTTTGACGTTACTCATGCTGATCGTGCTGAGCTGCAAGACACCAGAGGCAAAAGTACACTATCAGAAAGTCAGCCTAAGCAATCAGGCCTCATTTTTGCTACGCTAACACTGGCGGATTTAGCGTGAGATCCCATTTGGTAGAGATTTCGTAACCAGCATGTGAGGAACCAAGGCTGTTGAAAGTCTTAAAGTCATGGTATGCAGGTTCAGtaaggaggtgtgtgtgtgtggaatataACTGGTTAGGAATATCATGTCTACTGGCTCGGTTCCACCAGAAGATATGGTGAAGGACTGAAGAGGTTTTTAAACGTATTACTTTAACAACGCTAAAATTGCAGGCACTATACTGATCATTAGGTTATACTGTCTGTAAAATGTGGTGATGGGACGAGAGAGGCCGGAACGACTCTGAGCTGTCTCTCTTATAACTCTTACGcaaactgaatgaatgaattttatCGTAAAGCagttttatctgtttaaatATCAAGTATTTGTTCCTTTGTGTAATAAATTGTGGTCAAATGAGGAAGATAAAGCCTCTCATGCTGGCTGAGCTAAAGCTTTGTATCTGATGTAGAGTACTCTGTGTTTACAGTTTAACACTGTGGTAGATTCAGTAAATTTCATGATGCTTTAATTCCGTTTTGCTGCTGAAGCTCCTCACACAGACGTTACACAGCTGATGGAAGGTGAGCTTAAATGAACATCCCAGCATGTTTCAACCTGAACTCTATCTTTGGCTTTTACAGCTTACAGTCAATTTGCAAGGACAGTAGATTTTGTAGATTTCCATTTGTTTGCTGTACttataaaagaacaaaaacaactaaaaacaaaaaaaacatacaatagaATTACAATACAATGAGCAGATGCTAAAATCTGTAACAGTTCATTGTTGCTGTCACTCATACACATATAATACGAATGGACCAATACAAGTGCTCTAAAatggcgctgccactatgagcgggagatcgcaggttcgaacccctgctcatgcagctttgccatcaagctgccggcgttagagggagcaaaattggccctgctccctctgggtgggtagatggcgctctctccccacatcgctcctatggtgatgtctgcagcacagggcgtctgtgagctgatgtaccggagccgagccgctgtgctttcctccaagcgcgctggctgctcggcatcagcagcagctcgaaaagaagcggtggctgacttcacatgtatcggaggaagcatgtgttagtcttcaccctcctgttgtgttggggcatcactagtgatagggggagtcctaatgagtgggttgggtaattggccgtgtaaattggggagaaaatgggaaaaattat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU108907 True 2659 lncRNA 0.44 2 15598679 15620782

Neighbor

gene id symbol gene type direction distance location
LOC111193204 NA coding upstream 56393 15507380 ~ 15542286 (+)
wdpcp wdpcp coding upstream 446198 15024469 ~ 15152481 (+)
peli1 peli1,peli1b,LOC107715974,LOC107583279,LOC107654901,LOC107670869,LOC107583565 coding upstream 647600 14892427 ~ 14951079 (+)
LOC103032735 LOC103032735,LOC108431665,LOC108270066,LOC107715976,LOC107583272,LOC107720922,LOC107670885,LOC107583566,LOC107654900 coding upstream 718973 14836482 ~ 14879706 (+)
LOC111193201 NA coding upstream 832656 14763570 ~ 14766023 (+)
eno4 NA coding downstream 61591 15682373 ~ 15704118 (+)
pla2g4f NA coding downstream 243701 15864483 ~ 15891088 (+)
kcnk18 NA coding downstream 276742 15897524 ~ 15920726 (+)
LOC103040417 ctsb,LOC108433939,LOC107733172,LOC102299207,LOC107752788 coding downstream 318621 15939403 ~ 15947994 (+)
LOC111193130 NA coding downstream 805743 16426525 ~ 16440795 (+)
G80787 ehbp1 non-coding upstream 339332 15254414 ~ 15259347 (+)
G80745 NA non-coding upstream 505470 15091192 ~ 15093209 (+)
LOC111193202 NA non-coding upstream 628734 14963233 ~ 14969945 (+)
G80674 NA non-coding upstream 633925 14964079 ~ 14964754 (+)
G80663 NA non-coding upstream 733316 14822876 ~ 14865363 (+)
G80867 NA non-coding downstream 3057 15623839 ~ 15624119 (+)
G80868 NA non-coding downstream 10386 15631168 ~ 15631558 (+)
G80869 NA non-coding downstream 43964 15664746 ~ 15664954 (+)
G80881 NA non-coding downstream 88803 15709585 ~ 15711163 (+)
G80887 NA non-coding downstream 98789 15719571 ~ 15721009 (+)
G80857 NA other upstream 15348 15563987 ~ 15583331 (+)
LOC111193203 NA other upstream 394892 15174535 ~ 15203787 (+)
LOC111188193 LOC108431664 other upstream 763600 14806315 ~ 14835079 (+)
LOC111193140 NA other upstream 795647 14788602 ~ 14803032 (+)
LOC103029370 pygb,LOC107553065,LOC107663289,LOC107671137,LOC107717055,LOC107583638 other upstream 800075 14730508 ~ 14798604 (+)
cmpk2 cmpk2 other downstream 2406525 18027307 ~ 18037074 (+)
LOC103035760 rtkn2,rtkn2a other downstream 2839341 18460123 ~ 18469635 (+)
LOC103033848 LOC108435752 other downstream 2890840 18511622 ~ 18520947 (+)
G81704 NA other downstream 3309456 18930238 ~ 18930754 (+)
G81761 NA other downstream 4044954 19665736 ~ 19666047 (+)

Expression


Co-expression Network