G80881


Basic Information

Item Value
gene id G80881
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 15709585 ~ 15711163 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU108929
GCGAGATCACGGACGCTCGCGTGCGGCAACAATGCCGATGGTCTGTTCGCTTTTCAGATGAAAAGCGACAGTGCTAAACGATCATGAGAATCCTAAAGGTTGTTATTCATGCTTCCTTTTTTATTCTAAGAAATCTAATTACtgttttctgtttacttttttaatgtttattttacttaaataaaaaaatagcattcaGCGAGACTTTAAAGAGAGACTTTTAGTAGAGGAAAAGTGAATCTAGACagattttagtagtcgagtctaaatcaagaccaagacttttagtagtctagTCCGAGTCAaaatcaagacttttagtagtcgagtctgaatcaaacccaagacttttagtagtcgagtctgaatcaaacccaagacttttagtagtcgagtccgaatcaaaccaaatatttttagtagtcgagtctgaaaCAAACcgaagacttttagtagttgtctgaatcaaaaccaagacttagtagtcaagtctgaaTCAGGAACaagacttgtttttttctggccaGCAGATGGTATGTAAATGCTAATATATGAAGAGCACTGAGTGAGAAGTGGATTAACTAAACACGGCCAGGCGATGCCACTGAGCAGAACGCCGTGCTGTTTACGCTGATTACTGAaggtttagtttcagtttctaaATAACATTACCATAGAAAAACACGAGAGGCGGATGGTCTTGAACAATTCCCAAATTCTCAAGACCACCTCTCCCTGAGACAAGGCCCCCGAGACGAGCCTGAGACCTCTCATTTATGGTCTTGAGACAGAGACCGGACTAGAGTACTACAACACACAGGACTAGAATATTACTAGGACTAGtagctgagctaacttagccttagcaattttttgtttacaattttgtttataaCTGGATTgccactgctaaggtaaatttcTAACTAGTATTGCACTGTGCAATATtaattgcaataataatattgcaagtgaatttatgatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU108929 True 985 lncRNA 0.38 2 15709585 15711163

Neighbor

gene id symbol gene type direction distance location
eno4 NA coding upstream 5467 15682373 ~ 15704118 (+)
LOC111193204 NA coding upstream 167299 15507380 ~ 15542286 (+)
wdpcp wdpcp coding upstream 557104 15024469 ~ 15152481 (+)
peli1 peli1,peli1b,LOC107715974,LOC107583279,LOC107654901,LOC107670869,LOC107583565 coding upstream 758506 14892427 ~ 14951079 (+)
LOC103032735 LOC103032735,LOC108431665,LOC108270066,LOC107715976,LOC107583272,LOC107720922,LOC107670885,LOC107583566,LOC107654900 coding upstream 829879 14836482 ~ 14879706 (+)
pla2g4f NA coding downstream 153320 15864483 ~ 15891088 (+)
kcnk18 NA coding downstream 186361 15897524 ~ 15920726 (+)
LOC103040417 ctsb,LOC108433939,LOC107733172,LOC102299207,LOC107752788 coding downstream 228240 15939403 ~ 15947994 (+)
LOC111193130 NA coding downstream 715362 16426525 ~ 16440795 (+)
dnal1 dnal1 coding downstream 752738 16463901 ~ 16467758 (+)
G80869 NA non-coding upstream 44631 15664746 ~ 15664954 (+)
G80868 NA non-coding upstream 78027 15631168 ~ 15631558 (+)
G80867 NA non-coding upstream 85466 15623839 ~ 15624119 (+)
G80864 NA non-coding upstream 88803 15598679 ~ 15620782 (+)
G80787 ehbp1 non-coding upstream 450238 15254414 ~ 15259347 (+)
G80887 NA non-coding downstream 8408 15719571 ~ 15721009 (+)
LOC111193205 NA non-coding downstream 15431 15726594 ~ 15729262 (+)
G80942 LOC108433938,LOC108269891,LOC105908308,LOC107674111,LOC105908357,LOC107733184,LOC107592771,LOC107752785,LOC107697773 non-coding downstream 250344 15961507 ~ 15963105 (+)
LOC111193206 NA non-coding downstream 312662 16023825 ~ 16032864 (+)
G80998 NA non-coding downstream 370155 16081318 ~ 16086958 (+)
G80857 NA other upstream 126254 15563987 ~ 15583331 (+)
LOC111193203 NA other upstream 505798 15174535 ~ 15203787 (+)
LOC111188193 LOC108431664 other upstream 874506 14806315 ~ 14835079 (+)
LOC111193140 NA other upstream 906553 14788602 ~ 14803032 (+)
LOC103029370 pygb,LOC107553065,LOC107663289,LOC107671137,LOC107717055,LOC107583638 other upstream 910981 14730508 ~ 14798604 (+)
cmpk2 cmpk2 other downstream 2316144 18027307 ~ 18037074 (+)
LOC103035760 rtkn2,rtkn2a other downstream 2748960 18460123 ~ 18469635 (+)
LOC103033848 LOC108435752 other downstream 2800459 18511622 ~ 18520947 (+)
G81704 NA other downstream 3219075 18930238 ~ 18930754 (+)
G81761 NA other downstream 3954573 19665736 ~ 19666047 (+)

Expression


Co-expression Network