G80942 (LOC108433938,LOC108269891,LOC105908308,LOC107674111,LOC105908357,LOC107733184,LOC107592771,LOC107752785,LOC107697773)


Basic Information

Item Value
gene id G80942
gene name LOC108433938,LOC108269891,LOC105908308,LOC107674111,LOC105908357,LOC107733184,LOC107592771,LOC107752785,LOC107697773
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 15961507 ~ 15963105 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU109001
GGTTCCACTATTTTCTCGCCATACTTCATAGCTCCATCCCAGTCCTGCATATAGAGACAAACACCCATAGCCTGGtacatcatgtgcagcatgtacACATTGGTGTCCTCAAAGATGGAACCCATCTTCTCCATACTCAACTCGCATATCTCCAGCAGTTCACTGGGAGTCTTATAATGTTTAGCTTTCCTGAACTCCTCAATGACATTCTTGGCATACAGCACCATTTTTCGAATTTCCTCGGGCTCTGGGGGAGTACTTAGCTTCCGGCGAATCTCCATTTTGGCTTTATCCTGCAAAAGCCACAGGTCAGTTTCACAAGACATGCTAGACATGCAAGTGTTGATAAGAAATAAGCATTACCAGA

Function

NR:

description
PREDICTED: N-lysine methyltransferase SMYD2-A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU109001 True 367 lncRNA 0.45 2 15961507 15963105

Neighbor

gene id symbol gene type direction distance location
LOC103040417 ctsb,LOC108433939,LOC107733172,LOC102299207,LOC107752788 coding upstream 13513 15939403 ~ 15947994 (+)
kcnk18 NA coding upstream 40781 15897524 ~ 15920726 (+)
pla2g4f NA coding upstream 70419 15864483 ~ 15891088 (+)
eno4 NA coding upstream 257389 15682373 ~ 15704118 (+)
LOC111193204 NA coding upstream 419221 15507380 ~ 15542286 (+)
LOC111193130 NA coding downstream 463420 16426525 ~ 16440795 (+)
dnal1 dnal1 coding downstream 500796 16463901 ~ 16467758 (+)
tedc1 NA coding downstream 508750 16471855 ~ 16486398 (+)
tmem121 tmem121a,tmem121,LOC107594772,LOC107674105,LOC107592808,LOC107697696 coding downstream 555111 16518216 ~ 16539460 (+)
ccdc28a ccdc28a coding downstream 623082 16586187 ~ 16593573 (+)
LOC111193205 NA non-coding upstream 232245 15726594 ~ 15729262 (+)
G80887 NA non-coding upstream 240498 15719571 ~ 15721009 (+)
G80881 NA non-coding upstream 250344 15709585 ~ 15711163 (+)
G80869 NA non-coding upstream 296553 15664746 ~ 15664954 (+)
G80868 NA non-coding upstream 329949 15631168 ~ 15631558 (+)
LOC111193206 NA non-coding downstream 60720 16023825 ~ 16032864 (+)
G80998 NA non-coding downstream 118213 16081318 ~ 16086958 (+)
G81011 NA non-coding downstream 201375 16164480 ~ 16170976 (+)
G81017 NA non-coding downstream 304202 16267307 ~ 16267608 (+)
G81018 NA non-coding downstream 305968 16269073 ~ 16273199 (+)
G80857 NA other upstream 378176 15563987 ~ 15583331 (+)
LOC111193203 NA other upstream 757720 15174535 ~ 15203787 (+)
LOC111188193 LOC108431664 other upstream 1126428 14806315 ~ 14835079 (+)
LOC111193140 NA other upstream 1158475 14788602 ~ 14803032 (+)
LOC103029370 pygb,LOC107553065,LOC107663289,LOC107671137,LOC107717055,LOC107583638 other upstream 1162903 14730508 ~ 14798604 (+)
cmpk2 cmpk2 other downstream 2064202 18027307 ~ 18037074 (+)
LOC103035760 rtkn2,rtkn2a other downstream 2497018 18460123 ~ 18469635 (+)
LOC103033848 LOC108435752 other downstream 2548517 18511622 ~ 18520947 (+)
G81704 NA other downstream 2967133 18930238 ~ 18930754 (+)
G81761 NA other downstream 3702631 19665736 ~ 19666047 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G2574 NA non-coding NC_053112.1 CM020909.1 8055499 ~ 8078861 (+)
striped catfish (Pangasianodon hypophthalmus) G170893 LOC108269891,LOC108433938,LOC105908308,LOC105908357,LOC107592771,LOC107752785,LOC107674111,LOC107733184 non-coding NC_047604.1 CM018550.1 24010349 ~ 24011349 (+)
bowfin (Amia calva) G2945 LOC104942205,LOC105908308,LOC105908357,LOC107592771,LOC107752785 non-coding CM030121.1 CM030121.1 17208035 ~ 17210041 (+)
mexican tetra (Astyanax mexicanus) G149340 NA non-coding NC_035913.1 CM008316.1 4719076 ~ 4771503 (+)