G86596


Basic Information

Item Value
gene id G86596
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 39058021 ~ 39060498 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU116626
TggctttaacatttaaaatcaatacatGAGATGTGTAGCATCTGGAAAACAAGAGATATACATCTATGACATTAATATCATTACTAAACATTTCATCATTCTAAAATAAGGAATAGCAAACAATTAAGTTATAATTTGTATTACTTGTCATTTTAGGCTAAATCAGTTTCCTAGTTTTCCTTATAGGCCTGTCGCAATAACTACATTAGcgacttatcgttcaataaatgaacataaccttaatcattttaataatggtgataacgtccattgtgtttgcacttacaaaatgcGCTTATATATACTGTGGGCGTGACTCGGTAGCGcagaagcacagagagagacagccacagggagtaaatgaactcaaaacatacctttattaggaaaaatggaaaaatcaacACACAAAACAAGCTTAAAGAAACATAGGAATGGCTCAGTGCGGCTCTAGTCgcttaactttagtgtctcttaGGTTCCTGCTAAGGCAAAGTCTTTATGGGGGTCCaatgcgggccagctgggacagaccggggcctCTGCACTTCacaatgtgtatgtatatgtaatgtgtatgtgtgtatatatacatacacacacattatttatGACTATAACCTACTTTGGTTCAAGCTAGGAACTTTTCGGGTTCCAAAATTAAGTCTGTAAACAGGATTGGAAagtttgtctttaaaagggtgcaATCCCTTTGTGATGATATGTTATCATTATATAAGTGCCATTTAAGGGTTTTAAAATGCcaacaatattgtttatcgcaataatttctgggacaaaatattgtttgcaaaaatgttttattgtgacGGGCCTATTTAATAAATCTACCTTTTATAAGCACAGTATCTGTACCAGAGAATTAAACAGAGTGAATATATGCTGTGATAGTTTCTACAAATACCAAACGCTGAGTAGGAGCAGTATTGTTGTAAGGGGTGGGACGTCTAAAGCGCTGGTGGTCTTGGCTAAGAGTATCAAAGGAAATATTTGACTGTGTAAAGTAATATCACATCAATcattcactgtgtgtgtgtgtgtgcttagtTCTGTGTGAGGATGCTGTGTGAGGACTAAATGTTCCCAGtatgatttaaaaacaaacacaaatgtatttatttttgattaaatcTGAGGATTTTATTagttaaaaggtaaaacagGTCAGAGCTGCTGATCTTCTGGTGGCTACTGAGGTTCAGGGTAGAATGGGGTTAGGTGTGTcttatgaattttaacagttacTAAATCATTTCTGTTGCTTTATGTTTctttaaagaacacattttacTTTACCAACATACACTATACAGCCAAAATATTCACATACCCTTCAGAATTAATTTAGAATCAATCAATTCGTTTGCATGGCCACATATGTAAGGTTGCCAAAAGAATGGTACTGTCTGACTGCATTTTGCTgatgtaaagtttggtagaggggggattattatattatggtttGGGTTATGTTCAGGAATTGGGCTCAGCCCCTTAGTTCCAGTCAAAGGAACTcttccttcactctctctttccctccaattctctctctcactttctctccccAGCACTCTTACACAGATCCCTCTTGCCCTTACTCTCTCaaacccactctctctcccttactctctcaaacccactctctctcccttactttctccctttctcttaaACCCAGTCTCTCACTTCCTCTCCTCAGCGCTCTTACACAGATCCCTCTCTCCCTTACTCTCTCAAACCTAGTCTTTCACTTTCTATCCACAGCACTCTTACACAGATCCCTCTCTCCCTTACTCTCtcaaacCTAGTCTTTCACTTCCTCTCCCCAGCGCTCTTACACAGATCCCTCTCTCCCTTACTCTCTCAAACCCACTCTTACTTTCTCTCCCCAGCACTCTTACACAGATCCCTCTCTCCCTTACTCTCTCAAACCCACTCTTACTTTCTCTCCCCAGCACTCTTACACAGATCCCTCTCTCCCTTACTCTCTCAAAcccactctcactttctctccatAGCACTCTTACACAGATCCCACTCTTACTTTCTCTCCCCAGCACTCTTACACAGATCCCTCTCTCC
>TU116627
TggctttaacatttaaaatcaatacatGAGATGTGTAGCATCTGGAAAACAAGAGATATACATCTATGACATTAATATCATTACTAAACATTTCATCATTCTAAAATAAGGAATAGCAAACAATTAAGTTATAATTTGTATTACTTGTCATTTTAGGCTAAATCAGTTTCCTAGTTTTCCTTATAGGCCTGTCGCAATAACTACATTAGcgacttatcgttcaataaatgaacataaccttaatcattttaataatggtgataacgtccattgtgtttgcacttacaaaatgcGCTTATATATACTGTGGGCGTGACTCGGTAGCGcagaagcacagagagagacagccacagggagtaaatgaactcaaaacatacctttattaggaaaaatggaaaaatcaacACACAAAACAAGCTTAAAGAAACATAGGAATGGCTCAGTGCGGCTCTAGTCgcttaactttagtgtctcttaGGTTCCTGCTAAGGCAAAGTCTTTATGGGGGTCCaatgcgggccagctgggacagaccggggcctCTGCACTTCacaatgtgtatgtatatgtaatgtgtatgtgtgtatatatacatacacacacattatttatGACTATAACCTACTTTGGTTCAAGCTAGGAACTTTTCGGGTTCCAAAATTAAGTCTGTAAACAGGATTGGAAagtttgtctttaaaagggtgcaATCCCTTTGTGATGATATGTTATCATTATATAAGTGCCATTTAAGGGTTTTAAAATGCcaacaatattgtttatcgcaataatttctgggacaaaatattgtttgcaaaaatgttttattgtgacGGGCCTATTTAATAAATCTACCTTTTATAAGCACAGTATCTGTACCAGAGAATTAAACAGAGTGAATATATGCTGTGATAGTTTCTACAAATACCAAACGCTGAGTAGGAGCAGTATTGTTGTAAGGGGTGGGACGTCTAAAGCGCTGGTGGTCTTGGCTAAGAGTATCAAAGGAAATATTTGACTGTGTAAAGTAATATCACATCAATcattcactgtgtgtgtgtgtgtgcttagtTCTGTGTGAGGATGCTGTGTGAGGACTAAATGTTCCCAGtatgatttaaaaacaaacacaaatgtatttatttttgattaaatcTGAGGATTTTATTagttaaaaggtaaaacagGTCAGAGCTGCTGATCTTCTGGTGGCTACTGAGGTTCAGGGTAGAATGGGGTTAGGTGTGTcttatgaattttaacagttacTAAATCATTTCTGTTGCTTTATGTTTctttaaagaacacattttacTTTACCAACATACACTATACAGCCAAAATATTCACATACCCTTCAGAATTAATTTAGAATCAATCAATTCGTTTGCATGGCCACATATGTAAGGTTGCCAAAAGAATGGTACTGTCTGACTGCATTTTGCTgatgtaaagtttggtagaggggggattattatattatggtttGGGTTATGTTCAGGAATTGGGCTCAGCCCCTTAGTTCCAGTCAAAGGAACTcttccttcactctctctttccctccaattctctctctcactttctctccccAGCACTCTTACACAGATCCCTCTTGCCCTTACTCTCTCaaacccactctctctcccttactctctcaaacccactctctctcccttactttctccctttctcttaaACCCAGTCTCTCACTTCCTCTCCTCAGCGCTCTTACACAGATCCCTCTCTCCCTTACTCTCTCAAACCTAGTCTTTCACTTTCTATCCACAGCACTCTTACACAGATCCCTCTCTCCCTTACTCTCtcaaacCTAGTCTTTCACTTCCTCTCCCCAGCGCTCTTACACAGATCCCTCTCTCCCTTACTCTCTCAAACCCACTCTTACTTTCTCTCCCCAGCACTCTTACACAGATCCCTCTCTCCCTTACTCTCTCAAACCCACTCTTACTTTCTCTCCCCAGCACTCTTACACAGATCCCTCTCTCCCTTACTCTCTCAAAcccactctcactttctctccatAGCACTCTTACACAGATCCCTCTCTCCAACCCACTCTCTCTCCCCAGCACTCTTACACAGAACCCTCTCTC

Function

NR:

description
PREDICTED: lipoma HMGIC fusion partner-like 3 protein isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU116626 False 2103 lncRNA 0.39 5 39058021 39060498
TU116627 True 2108 lncRNA 0.39 4 39058186 39060498

Neighbor

gene id symbol gene type direction distance location
LOC103031521 flrt2 coding downstream 1224 39045638 ~ 39056797 (-)
LOC103041717 galc,LOC108444013,LOC108269778,LOC107372531 coding downstream 176067 38862143 ~ 38881954 (-)
ak7 NA coding downstream 201021 38836859 ~ 38857000 (-)
LOC111193258 NA coding downstream 276733 38772028 ~ 38781288 (-)
vrk1 vrk1,LOC106602366 coding downstream 359690 38665125 ~ 38698331 (-)
gsc gsc,LOC107750880,LOC107668603,LOC107671116,LOC107717065 coding upstream 625312 39685810 ~ 39692043 (-)
clmn LOC107583621,LOC102791389 coding upstream 813754 39874252 ~ 39940026 (-)
syne3 NA coding upstream 936016 39996514 ~ 40065403 (-)
LOC103047513 gabrr2a,LOC108435431,LOC108269496,LOC103368039,LOC103138775,LOC107755784 coding upstream 1010373 40070871 ~ 40120053 (-)
LOC103047828 rragd,LOC108435430,LOC107755772,LOC107583676,LOC107693082,LOC108270433 coding upstream 1095137 40155635 ~ 40194943 (-)
G86584 NA non-coding downstream 197688 38859525 ~ 38860333 (-)
G86493 NA non-coding downstream 507710 38549852 ~ 38550311 (-)
G86487 NA non-coding downstream 544727 38501266 ~ 38513294 (-)
G86486 NA non-coding downstream 562638 38495160 ~ 38495383 (-)
G86465 NA non-coding downstream 800762 38254686 ~ 38257259 (-)
G86625 NA non-coding upstream 224766 39285264 ~ 39287914 (-)
G86632 NA non-coding upstream 268283 39328781 ~ 39329078 (-)
G86646 NA non-coding upstream 377228 39437726 ~ 39438038 (-)
G86656 NA non-coding upstream 416557 39477055 ~ 39477373 (-)
G86663 NA non-coding upstream 476891 39537389 ~ 39537665 (-)
G86432 NA other downstream 988969 37982874 ~ 38069052 (-)
nrxn3 nrxn3,LOC107755774,LOC107583487 other downstream 1956440 36588904 ~ 37101581 (-)
G85902 tfb1m other downstream 3762987 35288232 ~ 35295034 (-)
daam2 daam2 other downstream 4586416 34274391 ~ 34471605 (-)
rbks rbks,LOC107553733,LOC107656748 other downstream 5045459 33955195 ~ 34012562 (-)
dicer1 dicer1,LOC107552827,LOC107671118,LOC107668604 other upstream 747632 39808130 ~ 39858569 (-)
LOC111193261 NA other upstream 1472870 40533368 ~ 40536334 (-)
LOC103044865 NA other upstream 1702174 40762672 ~ 40770501 (-)
LOC103040189 NA other upstream 2712569 41773067 ~ 41804888 (-)

Expression


Co-expression Network