Gene
RNA
| Item | Value |
|---|---|
| gene id | nrxn3 |
| gene name | nrxn3,LOC107755774,LOC107583487 |
| gene type | misc |
| species | mexican tetra (Astyanax mexicanus) |
| category of species | ornamental fish |
| Item | Value |
|---|---|
| chromosome id | NC_035905.1 |
| NCBI id | CM008308.1 |
| chromosome length | 42966623 |
| location | 36588904 ~ 37101581 (-) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| symbol | description |
|---|---|
| nrxn3 | Predicted to enable calcium channel regulator activity. Involved in several processes, including learning; social behavior; and vocalization behavior. Predicted to be located in GABA-ergic synapse. Predicted to be part of protein-containing complex. |
| description |
|---|
| PREDICTED: neurexin-3a-like isoform X2 |
| id | name | namespace |
|---|---|---|
| GO:0051965 | positive regulation of synapse assembly | biological_process |
| GO:0007269 | neurotransmitter secretion | biological_process |
| GO:0001525 | angiogenesis | biological_process |
| GO:0090129 | positive regulation of synapse maturation | biological_process |
| GO:0007155 | cell adhesion | biological_process |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0046872 | metal ion binding | molecular_function |
| id | description |
|---|---|
| K07377 | NRXN; neurexin |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_007248480.2 | False | 4071 | mRNA | 0.47 | 7 | 36588904 | 36778966 |
| XM_022673245.1 | True | 7713 | mRNA | 0.50 | 24 | 36588904 | 37101578 |
| XM_022673246.1 | False | 6936 | mRNA | 0.51 | 22 | 36588904 | 37087931 |
| XM_022673247.1 | False | 6924 | mRNA | 0.51 | 22 | 36588904 | 37087931 |
| XM_022673248.1 | False | 6924 | mRNA | 0.51 | 22 | 36588904 | 37087931 |
| XM_022673249.1 | False | 6909 | mRNA | 0.51 | 21 | 36588904 | 37087931 |
| XM_022673250.1 | False | 6882 | mRNA | 0.51 | 20 | 36588904 | 37087931 |
| XM_022673251.1 | False | 6861 | mRNA | 0.51 | 22 | 36588904 | 37087931 |
| XM_022673252.1 | False | 6819 | mRNA | 0.51 | 20 | 36588904 | 37087931 |
| XM_022673253.1 | False | 6657 | mRNA | 0.51 | 23 | 36588904 | 37087931 |
| XM_022673254.1 | False | 6648 | mRNA | 0.51 | 23 | 36588904 | 37087931 |
| XM_022673255.1 | False | 6336 | mRNA | 0.51 | 23 | 36588904 | 37087931 |
| XM_022673256.1 | False | 6327 | mRNA | 0.51 | 23 | 36588904 | 37087931 |
| XM_022673257.1 | False | 4597 | mRNA | 0.48 | 6 | 36588904 | 36778958 |
| XM_022673258.1 | False | 6959 | mRNA | 0.50 | 21 | 36588904 | 37101580 |
| XM_022673260.1 | False | 3991 | mRNA | 0.47 | 6 | 36588904 | 36778967 |
| XM_022673261.1 | False | 4080 | mRNA | 0.47 | 7 | 36588904 | 36778966 |
| XR_001518670.2 | False | 5525 | misc_RNA | 0.53 | 24 | 36591633 | 37101581 |
| XR_002650394.1 | False | 4775 | misc_RNA | 0.54 | 24 | 36591633 | 37087931 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| tdp1 | tdp1 | coding | downstream | 543794 | 35969637 ~ 36045110 (-) |
| kcnk13 | kcnk13,LOC107680770,LOC107588297,LOC107751801,LOC107755770,LOC107693081 | coding | downstream | 654008 | 35921481 ~ 35934896 (-) |
| LOC103039887 | LOC108437743 | coding | downstream | 677059 | 35891077 ~ 35911845 (-) |
| LOC103031708 | LOC103031708 | coding | downstream | 870692 | 35694549 ~ 35718212 (-) |
| LOC103042065 | LOC108437746 | coding | downstream | 956149 | 35607086 ~ 35632755 (-) |
| adck1 | adck1,LOC107740534,LOC107680795,LOC107751735,LOC107676278 | coding | upstream | 42916 | 37144497 ~ 37395219 (-) |
| slirp | slirp | coding | upstream | 299007 | 37400588 ~ 37403021 (-) |
| hhipl1 | hhipl1,LOC107740569,LOC107668615,LOC107680789,LOC107588281 | coding | upstream | 499827 | 37601408 ~ 37617010 (-) |
| vrk1 | vrk1,LOC106602366 | coding | upstream | 1563544 | 38665125 ~ 38698331 (-) |
| LOC111193258 | NA | coding | upstream | 1670447 | 38772028 ~ 38781288 (-) |
| G86212 | NA | non-coding | downstream | 110274 | 36477661 ~ 36478630 (-) |
| G86211 | NA | non-coding | downstream | 112636 | 36474071 ~ 36476268 (-) |
| G86210 | NA | non-coding | downstream | 114872 | 36471917 ~ 36474032 (-) |
| G86205 | ston2 | non-coding | downstream | 134684 | 36434710 ~ 36454220 (-) |
| G86203 | NA | non-coding | downstream | 186183 | 36402512 ~ 36402721 (-) |
| G86246 | NA | non-coding | upstream | 15419 | 37117000 ~ 37117209 (-) |
| G86294 | alkbh1 | non-coding | upstream | 303995 | 37405576 ~ 37409705 (-) |
| G86301 | NA | non-coding | upstream | 326402 | 37427983 ~ 37428393 (-) |
| G86308 | NA | non-coding | upstream | 341965 | 37443546 ~ 37444031 (-) |
| G86373 | NA | non-coding | upstream | 398252 | 37499833 ~ 37505351 (-) |
| G85902 | tfb1m | other | downstream | 1293870 | 35288232 ~ 35295034 (-) |
| daam2 | daam2 | other | downstream | 2117299 | 34274391 ~ 34471605 (-) |
| rbks | rbks,LOC107553733,LOC107656748 | other | downstream | 2576342 | 33955195 ~ 34012562 (-) |
| G85618 | slc4a1ap | other | downstream | 2749275 | 33834012 ~ 33839629 (-) |
| G85550 | NA | other | downstream | 3070233 | 33509680 ~ 33518671 (-) |
| G86432 | NA | other | upstream | 881293 | 37982874 ~ 38069052 (-) |
| dicer1 | dicer1,LOC107552827,LOC107671118,LOC107668604 | other | upstream | 2706549 | 39808130 ~ 39858569 (-) |
| LOC111193261 | NA | other | upstream | 3431787 | 40533368 ~ 40536334 (-) |
| LOC103044865 | NA | other | upstream | 3661091 | 40762672 ~ 40770501 (-) |
| LOC103040189 | NA | other | upstream | 4671486 | 41773067 ~ 41804888 (-) |
