RNA id: XR_001518670.2


Basic Information

Item Value
RNA id XR_001518670.2
length 5525
RNA type misc_RNA
GC content 0.53
exon number 24
gene id nrxn3
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 36588904 ~ 37101581 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gcgtgaaAAATCTCGTGCTTGCCCAGCGAGCGCGcgcgctgctctctctctccctgtgaTGCGCGGGACGGCAAGCCTTCTACACGGGTGGAAACCAACCTGAAGCAAAACCCCACCGAACCGCCACCAAACCCAAACCTTTCAGGAGCTTCAGCAGCTCTAATTCGGATTATTATTGGGATTTTTTTCTGGGGGACGCTGCGCTGGGAAAGCTGAGCTACAGCCCCCGCTATAAGAGCATATCAACTACAATACCCGCAAGGCAACATGATGGTGGTTTCCTCAGAAGGCAGAAGAGTAAGTGCGGTGGGATCTGGCTGGATGTTTgacagtgtgtgttcagtttgAAGCGAGTTTGTGAGGATAGCAGCTGCTCAGCAAGCACACCACCGTCTGCACACATCTTCTCAAGCTTCTCGAGTTAATCTGTGCCAGAACAAGAACATAGaacacaaacaaagaaacaaagaaacaaacaagaaccTAAAATACAACAAACGAATAAACCAGAACTTTGTCGACTGACAGAGAATATATTATTGTGCAATGTGATTGGCCTTACGACTGTTACTTAAGACTGTTCTCCCTCTCTACTGCCCCCTGTGTCCTCTTTACGGATATTAATCGTCGTGTCGTTGTTGAACCTTTTTTCGCTCGCTCACAGTGGGATGTACTTTGGATATACAGACCTCTGAACCAAAGCTGTTTTCAATGGTTTCCTATTGTTCAGGATTATAACCCTCCCCAATCTCCAGCACTTTCACAATGACTCTGCTCAGATATCCTATCCAGTTGCAGCTGCTGCTCAGCACTGTGCTTGGGCCCTGCTTGGGCCTGGAGTTTACAGGAGCACGAGGCCAGTGGGCCCGCTATCTCCGCTGGGACGCCAGCACCAGAAGTGACCTCAGCTTCCAGTTCAAAACGGACGCGTCCACCGCCTTGGTCTTGTACTTCGACGACGGCGGCTACTGCGACTTCCTGCAGCTCATGGTGGTGGAGGGCAAGCTGCAGCTGCAGTTCAGCATCGACTGCGCCGAGACCACCGTGGTTTCGGACAAGCGGGTGAACGACAGCAGCTGGCACTTTGTCAGCCTGGGAAGGTACAACCTGAGGACTGTGCTGGGCGTGGACGGCGCCAACAAGGCCGACGAGGTGCGGCCGCAGAGGCAGTACATGAAGATCGTCAGTGACCTCTTCTTGGGGGGACTTCCCCAGGACATTCGCACCTCAGTCCTGACCTTACCCACAGCCAAGGACCTGCCACCTTTTAAGGGGATTATCAGGGACCTGAAGTACGGCAGAAAGGTGCCCACCCTACTCAGCAGCCAGAAGGTGCGGATGGACATGGAGGGCATCTGTACGGAGAACCCGTGTGAAAACGGAGGGATATGCTCCCTCGTGGATGGAGAACCTCTATGCGATTGTTCCAAGACTGAGTACATAGGCCGATTTTGCAGCGAAGAGGCTAACAGCATCCCAGGCTTGGCACACATGATGATGGCCGACCAAGCCAAGAGCAAAGcACGCGAGGAGAACGTGGCCACGTTCCGGGGCTCGGAGTACTTCTGCTACGACCTGTCCCAGAACCCCATCCAGAGCAGCAGTGATGAGATCACGCTCTCCTTCAAGACCTGGCAGCGCAACGGCCTCATCCTGCACACGGGCAAGTCGGCAGACTACGTCAACCTGGCCCTGAAGGACGGGGCCGTGTCCCTGGTCATCAACCTGGGCTCCGGAGCCTTCGAGGCCATCGTGGAGCCGGTCAACGGCAAATTTAACGACAACGTCTGGCACGATGTCAAAGTCACACGCAACCTCAGACAGGTCACCATCTCGGTGGACGGGATCCTCACCACTACAGGCTACACGCAGGAGGACTATACCATGCTGGGCTCCGATGATTTCTTCTACGTTGGGGGGAGTCCAAGCACTGCGGATTTACCTGGATCACCCGTCAGCAACAACTTCATGGGCTGCCTGAAAGAGGTTGTCTACAAAAACAATGACATCAGGTTGGAGCTGTCTCGACTGGCTCGCATCGTGGATCCTAAGATGAAGATCCAGGGAGACGTGGTGTTTAAGTGTGAGAACGTGGCGACTCTAGACCCGATCTCCTTCGAAACACCCGAGGCCTACATCAGCCTGCCTAAGTGGAACACCAAGCGCATGGGGTCCATATCCTTCGACTTCCGCACGTCCGAGCCCAACGGACTCATCCTCTTCACtcacggaaagccccaggacaGGAAGGCCACTGGCAGCCAGAAAAACACCAAGGTGGACTTCTTCGCCGTGGAGCTGCTGGATGGAAGCCTGTACCTGCTGCTGGATATGGGCTCAGGCACCATCAAGGTGAAGGCCACGCAGAACAAGGTCAACGATGGGGCATGGTACCACGTGGACATCCAGAGAGATGGAAGATCAGGAACTATCTCAGTGAACAGTCGGCGTACGCCTTTCACTGCCAGCGGGGAGAGTGAAATCTTGGACCTGGAAGGAGACATGTATCTGGGTGGCCTTCCTGACAACCGGGCCGGTCTTATCCTACCCACGGAACTGTGGACTGCCATGCTGAACTACGGCTACGTGGGCTGCATCAGGGACCTGTTCATCGACGGGCGCAGTAAGGACATCAGGCAGATAGCGGAGGCCCAGAACGGAGCTGGCATCAAGCCCTCCTGTAACAAGGTGTCGGGCAAGCAGTGTGAAAGCTACCCCTGCAAGAACAAGGGCGTCTGTAAGGAGGGCTGGAACCGCTTCGTCTGCGATTGCACCGGAACCGGCTACTGGTCCCGCACCTGCGAGAGAGAGGCGTCTATCCTGAGCTACGACGGCAGTATGTACATGAAGGTGGTGATGCCCACAGTCATGCACACGGAGGCGGAGGACGTCTCCCTGCGCTTCATGTCTCAGAGAGCGTATGGGCTACTGATGGCCACCACCTCCCGCGACTCGGCCGACACCCTGCGGCTGGAGCTGGACGGCAGCCGCGTCAAGCTGACGGTCAACTTAGACTGTATCAGGATTAACTGTAACTCCAGCAAGGGACCAGAGACACTGTATGCTGGACAAAAACTCAATGACAATGAGTGGCATACGGTGCGGGTGATCCGGCGCGGTAAAAGCTACAAGCTCACAGTTGACGATGACGTAGCTGAAGGTCAGATGGTGGGTGACCACACCCGGCTTGAGTTCCACAACATAGAGACGGGCGTGATGACCGAGCGGCGCTTCGTCTCGCACATCCCGTCCAGCTTCATCGGCCACCTGCAGAGCCTGAAGTTCAACGGCCTGCTGTACATCGACCTGTGCAAGAACGGCGACATCGACTACTGCGAGCTGAACGCACGGTTCGGGATGCGCTCCATCATCGCTGACCCTGTGACCTTTAAAGCCAAGAGCAGCTACCTGAGTCTGGCCACGCTGCAGGCCTACACATCTATGCACCTTTTCTTCCAGTTCAAAACCACTTCTGCGGATGGCATCATCCTCTTCAACAGCGGCGACGGGAACGACTTCATCGCTGTGGAACTGGTGAAAGGGTACATACATTATGTGTTTGACCTTGGCAATGGCCCAAACCTCATCAAGGGTAACAGTGACAGACCTCTGAATGATAACCAGTGGCATAACGTGGTCATCACCAGAGATAACAGCAACCTCCACACACTGAAAATAGACGCCAAGGCCGTGAGTCAGGTTGTCAATGGTGCCAAGAACCTGGACCTAAAAGGAGATCTCTACATCGCCGGTTTAGGACCGAACATGTACAACAGCCTTCCCAAACTCGTAGCCTCGAGGGAAGGCTTCAAGGGCTGCCTGGCATCAGTGGACCTGAATGGCCGCCTCCCCGACCTGATAAACGACGCTCTGTTCCGCAGTGGACAGATTGAGCGTGGATGTGAAGTTGGTTTCATCAAAGCAGATCTACAAGGTCCTAGCACTACATGCCAGGAGGACTCCTGCGCCAACATGGGCATCTGCATCCAGCAGTGGGAGAACTACACCTGCGACTGCTCCATGACCTCCTACACCGGCACTCAGTGCAATGACCCTGGAACCACGTATATCTTTGGGAAAGGAGGAGGCACCATCACCTTTAACTGGCCGGCTAACGAGCGGCCGAGCACGCGCACGGACCGGCTGACCGTGGGCTTCAGCACCTCGCTGAAGGACGGCATTCTGGTGCGGATCGACAGCGCCCCAGGCCTGGGAGACTACCTCATGCTGCACATTGAACAAGGCAAAATCAGCGTCACGTTCAACATCGGGACAGTCGATATCATTGTGCAAGAAAACAGCATCCCGGTGAACGATGGCAAGTACCACGTGGTACGATTCACGAGAAACGGCGGCAATGCCACGCTACAGGTGGACAACTGGGCCATCAACGAGCACTTCCCCGCAGgCAACAACGATAATGAGAGATTGCAAATGGCAAATAAGAAAATCCCATTCAAATATGCCCGGCCCGTAGAGGAGTGGCTACAGGAGAAAGGGCGGCAGCTAACGATATTCAACACCCAGGCCACCATTACCATCGGAGGCAATGACCGCAAGAGGCCATTTCAGGGCCAGCTCTCGGGCCTCTACTACAACGGCCTGAAAGTGCTCAACATGGCCGCCCAGGGCAACCCCAACATCCGGATCAACGGCAGCGTGCGGCTGGTGGGGGACGTGCCCTCAGCCGGATCGGCCAGGACCACGGCGCTGCCCCCGGAAATGTCCACCACTTTCATCGAGACCACAACCACCATGTCCACCACAACCACCAGAAAGCACCGCTCGCCACCTACAATATCGagcacGGACGACATGGGCACGTCCGCCGAGTGCTCCAGCGACGACGAGGACTTGGAGGAGTGCAACCTCGAACATACAGCCAAAAGCTCTAATGCCGCCCGACCGCTTCGTACTGCCTTTACATGGACATGGCAACTGACTTACACAATCACCCCCATCATTGTCATCTCCTATGTAGTATGTTCATAGGTCCCGCCCCCTCTCCtcacacccccctcccccttctAGCTATGCTAAAATATGTACAGccatccattcattcagacTTTAAGAGTAAAATCAATCCAAGCAAAAAGTTTAATTACTAGAATGTAGATATTTATTGAAAATGATATATCAAATCCAAGGCTCAAATATGTACAGTTTTTTGTATGAAAACTGGATGATTTAAtgaagaagaaacaaaaaaacaaaacagaataatgGTGaagtttatttttcatgttatGTGGTGTGGATGTATGTGTTGTTGCCTCCCTGTATACTCATGTCTGAAGAATATATCTAACAAGAAATACAGTGGCTAGTAATTTTCTTTTCACAAGAAAAAAACCTGTCCAAGGACATTCTTACACAACTTtcttttgtgcacttttttctTCATGCCAAAATCATGCGGGCAATTTGTTGATGAGGTGAATTAATTATCCCAGTACATGTAGAAGATCCCTTAGAACTCCCTCCTGTAGCTACACGTGCACCCTCCATTCCTCTCCCCCCAA

Function

GO:

id name namespace
GO:0051965 positive regulation of synapse assembly biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0001525 angiogenesis biological_process
GO:0090129 positive regulation of synapse maturation biological_process
GO:0007155 cell adhesion biological_process
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116036 lncRNA downstream 113003 36477661 ~ 36478630 (-) True G86212
TU116035 lncRNA downstream 115365 36474071 ~ 36476268 (-) True G86211
TU116034 lncRNA downstream 115365 36474185 ~ 36476268 (-) False G86211
TU116030 lncRNA downstream 117601 36471917 ~ 36474032 (-) True G86210
TU116023 lncRNA downstream 137413 36434710 ~ 36454220 (-) True G86205
TU116099 lncRNA upstream 15419 37117000 ~ 37117209 (-) True G86246
TU116151 lncRNA upstream 303995 37405576 ~ 37409705 (-) True G86294
TU116158 lncRNA upstream 326402 37427983 ~ 37428393 (-) True G86301
TU116165 lncRNA upstream 341965 37443546 ~ 37444031 (-) True G86308
TU116308 lncRNA upstream 398252 37499833 ~ 37505351 (-) False G86373
XM_022673234.1 mRNA downstream 546523 35969637 ~ 36045110 (-) True tdp1
XM_022673233.1 mRNA downstream 656737 35921481 ~ 35934896 (-) True kcnk13
XM_022673229.1 mRNA downstream 679788 35891077 ~ 35911845 (-) False LOC103039887
XM_022673227.1 mRNA downstream 679788 35891077 ~ 35911845 (-) False LOC103039887
XM_022673228.1 mRNA downstream 679788 35891077 ~ 35911845 (-) False LOC103039887
XM_007248483.3 mRNA upstream 42916 37144497 ~ 37395219 (-) True adck1
XM_007248482.3 mRNA upstream 299007 37400588 ~ 37403021 (-) True slirp
XM_007248486.3 mRNA upstream 499827 37601408 ~ 37617010 (-) True hhipl1
XM_022673273.1 mRNA upstream 1563544 38665125 ~ 38698331 (-) True vrk1
XM_022673274.1 mRNA upstream 1563544 38665125 ~ 38698318 (-) False vrk1
TU115663 other downstream 1296599 35288232 ~ 35295034 (-) True G85902
XR_002650389.1 other downstream 2579071 33955389 ~ 34012562 (-) False rbks
XR_002650288.1 other downstream 2652932 33938460 ~ 33938701 (-) True LOC111193148
TU115290 other downstream 2752004 33834012 ~ 33839629 (-) True G85618
TU115204 other downstream 3072962 33509680 ~ 33518671 (-) True G85550
TU116404 other upstream 881293 37982874 ~ 38069052 (-) True G86432
TU117171 other upstream 3431787 40533368 ~ 40536334 (-) True LOC111193261
TU117264 other upstream 3662511 40764092 ~ 40770471 (-) False LOC103044865
TU117804 other upstream 4693954 41795535 ~ 41804888 (-) False LOC103040189

Expression Profile