RNA id: TU116023


Basic Information

Item Value
RNA id TU116023
length 2066
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G86205
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 36434710 ~ 36454220 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGTAACAAGCGTTTAACAACCTGCCACAATAAAGCCTTACCTGAGTTTTTGTCCGGCAGTCGGCTAATCCTCCACACCACAGATTTAAAGGCCTGTTCATACTTGGCAGTTCCCAGAGTGACCCTCATGGCGGGTTCTGAGCCGGAACTGCTCGTAGTCCCGAAGCTGGCTCCTTTATTGAAGCGAGCCTTAAGGGACTTCTCTCCGGTGACACTCTCCCTGCGGAAGTTCTTGGCCCATATTTCAGGTAGCGGGTAACGGACAGCTACGTTTTCACACGGTATAAGTGTGAGAGGGTCTCTGTTGGACGAGAAGCCGGTCGACATCACCAGCCAGGACTGGAGCTCCACCTCTGCACCACGAATGCTGACAACCGTTCTCACGGTGAAGGGAAGCGTCTTTTCCGCGTAGGTTGTTCTGAATCGCAGCAGCTCGAATCGACGTCCAGACGGAGGATCAAAAGCGATGATCCTGGATTCGTCAAATTCCGACTGATCCCCACACTCGTTGAGCCTACAGTCCTGCAAGCGTATCCAGCGTGTGGTGGTGTTTGGAACGATGTCATGACGGGATACCACCTCTTTTCCTCTGACCTGGACGTCGTTGAGTCCGATGTGACATATCGGTGAGCCCGTCAGGAACGCAAGAACATTGACTTGGGTCGTAACCAGGTGTTCTAGAATACGACTATCACCTTTCGACAGGACCCCATAAAAACTATCGATCACTTCTACCTGAATCTCTTCTTCAGAGTAGGACGCAGGTGAACTGATGGACTCTGGGTCTGCAGACAGGTTGGCCAGCTTTTCTTGCAAAGCATACCTGAAGCTTTGGAAGTCCTGGTATTCGACAGTCCCAAGCTTGACCAGTTGCTCCTTGACAGGCATGTGAACCACGGTCACTTTGGGCTGGATCTTACGCTTCTCTTTGTACACCACGTGGTCCAAGCTGAGGGTGTGAACTCGCCCGTTCTCTTCATAGTTCTGCAGCCTGGGTTCAGAAACCTCGAGCTGAGTGTTTAGCTGGAACTCCTTGAAGGGTTTCTCCAGGCCCTTTTCGTAGAAAAGCTGCAGACTGCCAGCATCACTCAGCCTGACGAAGATGGGTCCCCAGTGCCGAGAGgacatgatgttctttttctccgGGATGCGGAGAAGCATGGGCCAGCCATTCTGGGGAGCCATGTGAGATGGTTCATACGGTGTCGCCTCTTCGTCCCCTGTGTCCAAAGAATCGTCTGGTAAAGTGGGACTGCCGACTTGGTCAGGGTCAGAGATCTGCATGTTTTTGAGCTGATCCAGGTCATCTCCAGGAGGACCTGAGGGGAAGAAGTCCTGGCCACCGGTGCTAGACTCACTATCAGGGCTGAAGAGCAGCAAGGATTCCCGTTTGATGTCAGAAGGATTGGGTTCAAAGACAGGGGAACTGAAGGAAAAAGATTTGGGAGTGGCTGAGCCATTGCTTTCAGTGGATTTTAACTCAGTCTTGTTAAAGTAGGCACTGAAAGGGTTGATTGGCGAAGGCTGAACGTTAGAAAACTCATCATCCAGGAAGGGGTTCTTCTTGGTGTAAGGAGTGGTGTTGTTCAGCAGTGGGCTGTCTAATGTAAATGCTGGGTGTGTGCTATCGGGGGTTAAGTCCAGGATGTGCCTGTCGGTACTGGTTCTGTTCTGGATGGGTGAAACTATCAGGTTGCTGTTGGCATCTTGTAACGGAGAGTTGTTGAGGTTGTCAAGCGCGATGTTGGATGGTTTCGGAGCATATTTGTAGTCTGTCGCctcgtcatcatcatcaaacGTTACCCAGCTGGCGAATCGGCCGGGTAGCGTACTGTTGGCGTACTGCTGGCCGTTGGTGTGTGGGTTCTTGGCTGTCCAGTTAAGTGTATCCATGTTTATTCCTTCATCGTCTTGGCAAACAGACGAATCTGCAAagcTGGGTGAATGTGGGCGGGAGGTGGTCTGGCTGGGCGGCTCCTCTGTGGTGAGCGAGGGCAGGTCACTGGAGGACGCCCCCACGCTCATTGAACTGCGCTCCTCAGATTCAGGCACCGCACTCCAGAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116021 lncRNA downstream 31989 36402512 ~ 36402721 (-) True G86203
TU115923 lncRNA downstream 270458 36162532 ~ 36164252 (-) True G86121
TU115825 lncRNA downstream 531237 35903069 ~ 35903473 (-) True G86032
TU115807 lncRNA downstream 546996 35879400 ~ 35887714 (-) True G86022
TU115818 lncRNA downstream 577602 35853638 ~ 35857108 (-) True G86027
TU116030 lncRNA upstream 17697 36471917 ~ 36474032 (-) True G86210
TU116035 lncRNA upstream 19851 36474071 ~ 36476268 (-) True G86211
TU116034 lncRNA upstream 19965 36474185 ~ 36476268 (-) False G86211
TU116036 lncRNA upstream 23441 36477661 ~ 36478630 (-) True G86212
TU116099 lncRNA upstream 662780 37117000 ~ 37117209 (-) True G86246
XM_022673234.1 mRNA downstream 389600 35969637 ~ 36045110 (-) True tdp1
XM_022673233.1 mRNA downstream 499814 35921481 ~ 35934896 (-) True kcnk13
XM_022673230.1 mRNA downstream 522866 35891077 ~ 35911844 (-) False LOC103039887
XM_022673258.1 mRNA upstream 134684 36588904 ~ 37101580 (-) False nrxn3
XM_022673245.1 mRNA upstream 134684 36588904 ~ 37101578 (-) True nrxn3
XM_022673250.1 mRNA upstream 134684 36588904 ~ 37087931 (-) False nrxn3
XM_022673248.1 mRNA upstream 134684 36588904 ~ 37087931 (-) False nrxn3
XM_022673252.1 mRNA upstream 134684 36588904 ~ 37087931 (-) False nrxn3
TU115663 other downstream 1139676 35288232 ~ 35295034 (-) True G85902
XR_002650389.1 other downstream 2422148 33955389 ~ 34012562 (-) False rbks
XR_002650288.1 other downstream 2496009 33938460 ~ 33938701 (-) True LOC111193148
TU115290 other downstream 2595081 33834012 ~ 33839629 (-) True G85618
TU115204 other downstream 2916039 33509680 ~ 33518671 (-) True G85550
XR_001518670.2 other upstream 137413 36591633 ~ 37101581 (-) False nrxn3
XR_002650394.1 other upstream 137413 36591633 ~ 37087931 (-) False nrxn3
TU116404 other upstream 1528654 37982874 ~ 38069052 (-) True G86432
TU117171 other upstream 4079148 40533368 ~ 40536334 (-) True LOC111193261
TU117264 other upstream 4309872 40764092 ~ 40770471 (-) False LOC103044865

Expression Profile