LOC103031708 (LOC103031708)


Basic Information

Item Value
gene id LOC103031708
gene name LOC103031708
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 35694549 ~ 35718212 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248462.3
AACGCAGAAGCAGAGAATAGGAGGCTACTGTTGCTCTTCACTCCATCTCCTCAGGACAGGTGCCTGATACACACTCAGCACAGTGTGTCCTGCATCACAGCCGTTACTCAGTGTAGAATGAAGACGCCGCTCTGGACCCTGCTGCTCCTGGGGCTGTGTGTCCCTGGACACAGCGACTGTCAGAAGGACTGTCTGTTCTGCGGTCAGATCCTGCCCAAAGACCTCACCTTCAACACACTGGTCTGCTTGGTGGAATGTGGCAAGGCTTCACCGGGCCTGAACTGGGAGATGTGTCGCACAGCCATGGAAGAAGGACCGCAGGCCTCCCTGTCAGTAGGGGGCACCATGCTGAAAAGAGCTGAAGAGGAGGTGGAGTCAGTGCTGCCTCTGGAGCAGAGCGACGGAGGCCTGGTGTATTCTAACGCTCTGCAGAGGTTTGACCACGTGGCTCGGGCCATGGGTCTGGACCAACTGGGCCGGGAGAGCCAAAGCACCCAGTATAGCGCCTCCTACCAGTCCCAGCAGTCCCAGCAGTCCCAGTCCGCAGAGGGAGACGGGGAGGATGAGGAGGACGGgggcagagagatggagaacGATCAGGATGGTGCACCAGTAAATCTGACCAAACGCTTTGGAGGCTTCTTGAAGAGCAAGTACGGCTACAGGAAGTTCATGGACCCTGGCAGGTCTTTACAGAAGAGGTACGGAGGCTTCATCGGCGTCCGCAAGTCTGCCCGGAAGTGGAACAACCAGAAGCGCTTCAGCGAGTTTCTAAAGCAGTACTTGGGCATGACCACTCGGGCCAGTGAGTTCAACAGCGTGTCGACTGGTATCGCCCAGCAGAACGAAGTCTAGGCCTCGACAGTAGCAGTAGACTCACCCAGCAAGCCTTTCATTCGTCCTGCTCAAGTCCAGAGATACTATATACACCTCTTTCTGCATCTCCATTAACATGCGGCCATGGAATGCAACATGGTTAGATATGATCATTAAACCTGTAAGATTTCATAAACATAACCCACCAGTACAGGCTCAGTACTAGTGCTTGGCGCTAATGTTAAAAATTCAATGTcgatatggtaacactttacattgaGTTATGAAGTAATGCTTTAGTTTACATGAACAAGACATGAAGTAATGCTTTAATAATGCTAAACTTTACATGTTAACATGTACCAactgtttgaactcaaattatttaagtctgtttgacataaaattggatatttctaaacattactcaactatttttag
>XM_022672500.1
CGCAGAAGCAGAGAATAGGAGGCTACTGTTGCTCTTCACTCCATCTCCTCAGGACAGGTGCCTGATACACACTCAGCACAGCAGTGTGTCCTGCATCACAGCCGTTACTCAGTGTAGAATGAAGACGCCGCTCTGGACCCTGCTGCTCCTGGGGCTGTGTGTCCCTGGACACAGCGACTGTCAGAAGGACTGTCTGTTCTGCGGTCAGATCCTGCCCAAAGACCTCACCTTCAACACACTGGTCTGCTTGGTGGAATGTGGCAAGGCTTCACCGGGCCTGAACTGGGAGATGTGTCGCACAGCCATGGAAGAAGGACCGCAGGCCTCCCTGTCAGTAGGGGGCACCATGCTGAAAAGAGCTGAAGAGGAGGTGGAGTCAGTGCTGCCTCTGGAGCAGAGCGACGGAGGCCTGGTGTATTCTAACGCTCTGCAGAGGTTTGACCACGTGGCTCGGGCCATGGGTCTGGACCAACTGGGCCGGGAGAGCCAAAGCACCCAGTATAGCGCCTCCTACCAGTCCCAGCAGTCCCAGCAGTCCCAGTCCGCAGAGGGAGACGGGGAGGATGAGGAGGACGGgggcagagagatggagaacGATCAGGATGGTGCACCAGTAAATCTGACCAAACGCTTTGGAGGCTTCTTGAAGAGCAAGTACGGCTACAGGAAGTTCATGGACCCTGGCAGGTCTTTACAGAAGAGGTACGGAGGCTTCATCGGCGTCCGCAAGTCTGCCCGGAAGTGGAACAACCAGAAGCGCTTCAGCGAGTTTCTAAAGCAGTACTTGGGCATGACCACTCGGGCCAGTGAGTTCAACAGCGTGTCGACTGGTATCGCCCAGCAGAACGAAGTCTAGGCCTCGACAGTAGCAGTAGACTCACCCAGCAAGCCTTTCATTCGTCCTGCTCAAGTCCAGAGATACTATATACACCTCTTTCTGCATCTCCATTAACATGCGGCCATGGAATGCAACATGGTTAGATATGATCATTAAACCTGTAAGATTTCATAAACATAACCCACCAGTACAGGCTCAGTACTAGTGCTTGGCGCTAATGTTAAAAATTCAATGTcgatatggtaacactttacattgaGTTATGAAGTAATGCTTTAGTTTACATGAACAAGACATGAAGTAATGCTTTAATAATGCTAAACTTTACATGTTAACATGTACCAactgtttgaactcaaattatttaagtctgtttgacataaaattggatatttctaaacattactcaactatttttag
>XM_022672501.1
GAGGCTACTGTTGCTCTTCACTCCATCTCCTCAGGACAGGTGCCTGATACACACTCAGCACAGcgcggcgCTTCTACGCTTCTCAgaagaggatactgacctgtgcgttcacactgtgaaggtccGCCAGCAGTGTGTCCTGCATCACAGCCGTTACTCAGTGTAGAATGAAGACGCCGCTCTGGACCCTGCTGCTCCTGGGGCTGTGTGTCCCTGGACACAGCGACTGTCAGAAGGACTGTCTGTTCTGCGGTCAGATCCTGCCCAAAGACCTCACCTTCAACACACTGGTCTGCTTGGTGGAATGTGGCAAGGCTTCACCGGGCCTGAACTGGGAGATGTGTCGCACAGCCATGGAAGAAGGACCGCAGGCCTCCCTGTCAGTAGGGGGCACCATGCTGAAAAGAGCTGAAGAGGAGGTGGAGTCAGTGCTGCCTCTGGAGCAGAGCGACGGAGGCCTGGTGTATTCTAACGCTCTGCAGAGGTTTGACCACGTGGCTCGGGCCATGGGTCTGGACCAACTGGGCCGGGAGAGCCAAAGCACCCAGTATAGCGCCTCCTACCAGTCCCAGCAGTCCCAGCAGTCCCAGTCCGCAGAGGGAGACGGGGAGGATGAGGAGGACGGgggcagagagatggagaacGATCAGGATGGTGCACCAGTAAATCTGACCAAACGCTTTGGAGGCTTCTTGAAGAGCAAGTACGGCTACAGGAAGTTCATGGACCCTGGCAGGTCTTTACAGAAGAGGTACGGAGGCTTCATCGGCGTCCGCAAGTCTGCCCGGAAGTGGAACAACCAGAAGCGCTTCAGCGAGTTTCTAAAGCAGTACTTGGGCATGACCACTCGGGCCAGTGAGTTCAACAGCGTGTCGACTGGTATCGCCCAGCAGAACGAAGTCTAGGCCTCGACAGTAGCAGTAGACTCACCCAGCAAGCCTTTCATTCGTCCTGCTCAAGTCCAGAGATACTATATACACCTCTTTCTGCATCTCCATTAACATGCGGCCATGGAATGCAACATGGTTAGATATGATCATTAAACCTGTAAGATTTCATAAACATAACCCACCAGTACAGGCTCAGTACTAGTGCTTGGCGCTAATGTTAAAAATTCAATGTcgatatggtaacactttacattgaGTTATGAAGTAATGCTTTAGTTTACATGAACAAGACATGAAGTAATGCTTTAATAATGCTAAACTTTACATGTTAACATGTACCAactgtttgaactcaaattatttaagtctgtttgacataaaattggatatttctaaacattactcaactatttttag

Function

NR:

description
prepronociceptin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248462.3 False 1257 mRNA 0.50 3 35694549 35718212
XM_022672500.1 False 1258 mRNA 0.50 3 35694549 35718210
XM_022672501.1 True 1307 mRNA 0.51 4 35694549 35718192

Neighbor

gene id symbol gene type direction distance location
LOC103042065 LOC108437746 coding downstream 61794 35607086 ~ 35632755 (-)
scaf8 scaf8,LOC107749595,LOC107675315 coding downstream 94262 35557208 ~ 35600287 (-)
tiam2 tiam2 coding downstream 183804 35348184 ~ 35510745 (-)
cldn20 cldn20,LOC101886267,LOC107571061,LOC107675320,LOC107573130,LOC108443299,LOC107728965 coding downstream 357087 35321469 ~ 35337462 (-)
LOC103041141 LOC108423399 coding downstream 499219 34870145 ~ 35195330 (-)
LOC103039887 LOC108437743 coding upstream 172865 35891077 ~ 35911845 (-)
kcnk13 kcnk13,LOC107680770,LOC107588297,LOC107751801,LOC107755770,LOC107693081 coding upstream 203269 35921481 ~ 35934896 (-)
tdp1 tdp1 coding upstream 251425 35969637 ~ 36045110 (-)
adck1 adck1,LOC107740534,LOC107680795,LOC107751735,LOC107676278 coding upstream 1426285 37144497 ~ 37395219 (-)
slirp slirp coding upstream 1682376 37400588 ~ 37403021 (-)
G85970 LOC108437745 non-coding downstream 21658 35667763 ~ 35672891 (-)
G85955 NA non-coding downstream 88786 35604378 ~ 35605763 (-)
G85927 NA non-coding downstream 115449 35576936 ~ 35579100 (-)
G85926 NA non-coding downstream 139360 35554860 ~ 35555189 (-)
G85922 NA non-coding downstream 150123 35543952 ~ 35544426 (-)
G85980 NA non-coding upstream 7937 35726149 ~ 35726664 (-)
G86015 NA non-coding upstream 31352 35749564 ~ 35749814 (-)
G86016 NA non-coding upstream 31652 35749864 ~ 35750233 (-)
G86017 NA non-coding upstream 32346 35750558 ~ 35751677 (-)
G86018 NA non-coding upstream 52765 35770977 ~ 35771450 (-)
G85902 tfb1m other downstream 399515 35288232 ~ 35295034 (-)
daam2 daam2 other downstream 1222944 34274391 ~ 34471605 (-)
rbks rbks,LOC107553733,LOC107656748 other downstream 1681987 33955195 ~ 34012562 (-)
G85618 slc4a1ap other downstream 1854920 33834012 ~ 33839629 (-)
G85550 NA other downstream 2175878 33509680 ~ 33518671 (-)
nrxn3 nrxn3,LOC107755774,LOC107583487 other upstream 870692 36588904 ~ 37101581 (-)
G86432 NA other upstream 2264662 37982874 ~ 38069052 (-)
dicer1 dicer1,LOC107552827,LOC107671118,LOC107668604 other upstream 4089918 39808130 ~ 39858569 (-)
LOC111193261 NA other upstream 4815156 40533368 ~ 40536334 (-)
LOC103044865 NA other upstream 5044460 40762672 ~ 40770501 (-)

Expression


Co-expression Network