sh3yl1 (sh3yl1,LOC107733179,LOC107594817,LOC107674108)


Basic Information

Item Value
gene id sh3yl1
gene name sh3yl1,LOC107733179,LOC107594817,LOC107674108
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 16782537 ~ 16838704 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672829.1
TGAGAGAGTTTCACTCAGCGTCATTCTCCCTCATGTGTCCAAATGATTGCCTGATCTAAAGTGCTTGAAGTTTGACAGCGCGGTGTTTAACTACAGTCTAAACAGTCCTTTCTCACACCCCTCTGAACCCTCTCGCCCTACGGTGTGCGAAAAACACCTGTCTACAGGTGTGCTTTTGGGCAGTTTAATGTGAGTCGGGTCCTTTAAGACCATGAGTTTAGGCAGCAACAGGTTTGTCAGGTGAATCGGAAGTGGGTTCAGCGCAGGCTGCTTTACCTGAGCCAGGTGAGAACAGACAGTAAGGAACCTCTCCAGCCCCGGCGGTCAGTCAGTCCGGTAAAAtgaacaATCCAATTCCATCCAACCTGAAGTCTGAGGCCAAAAAGGCTGCTAAGATCCTGCGAGAATTCACAGAGATTTCAAACAGACAAGGTCCTGACAAGCTAATTCCAGCCCACGTGATTGCCAAAGCAGAAGGACTAGCCATCTTATCCGTCATCAAAGCTGGGTTCATGATCACTGCTCGAGGGGGCAGTGGGATAGTGATTGCTCGCCTTGCTGATGGAAGATGGTCGGCTCCGACAGCCATTGGCATTGCTGGGCTTGGTGGAGGATTTGAAATTGGTTTGGAGGCGTCCGATTTTGTTATCATCTTGAATCAGCGCAGAGCAGTTGAAGCCTTCAGCAAAGGGGGAAATCTCACATTTGGAGGAAATTGCACTGTGGCCGTTGGGCCTCTTGGCAGGAACTTAGAGGCTGATGTGGCGTTTCGGAGTACAGCCGCCGTGTTCTCCTACTGCAAGTCCCGCGGACTCTATGCTGGAGTGTCTCTTGTTGGATCGTGCATAATTGAACGCAAAGACACAAACAGAAAGTTCTATGGTCAGGATATTCGTGCATCTTCTATTCTTAATGGAGATGTAGAACCTCCCCCTGAAGCTCATGATCTTTATGCCATTTTGGATGACTATGCAGAAAAGTACTCCAGTGAAAGGCAGAGCAAATATCTCCAGTCTTCCAGCAAGGATTTTTTCACAAGGAGTGCAGCCCCATCTAGACCGAGACCTCCAGCAGCGAAGGCTGCTTCCTCCTTCACTCCAAGGGCAGCGGCTTCTTTTACTGAAACAAAGGCAGCACTCTACCTAATATCCGGCTGGCCGTCTGATCGCTCAGGCCAAGCATCCGGCGGGGCTCTGGTGGTCACAGCCAATCACCCTTTCACTGGCCAGCAGCCAGGAGACCTGAGCTTCGTGGCCGGGGACCGCATCACCGTCATCACAAAGACCGACTCTCAATACGACTGGTGGGAGGGAGAGCTGAGGGGCCAGGTCGGCATTTTCCCAGCTAACTTTGTGTCTTACTGAAAGCACTAATGCAAATGCTGTTATCATACTGCTTGGGGATTTAAGATCCAGGTTCCAGAGTGAaggatttctttctttctttctttctttcttttttttttaaacagtaaccTGGCGCTGGTTTACGCTTAAAGGTCAACTTATAATGAATGAGGTTTCAGTGTTAACCTGGTGTCAGAAGtgtatttattctcttttttaaaggtttgaaGTCTATTATACCACAGTCCAGGCAGAATAATCTGCACTTGATGGCAGACTTGAGTCCATCTTAAGTTCCtatgcatactttattatccttcttttacactgttcttcaatggtcaggccCCCAAAGGAGCACCACAAACATGGTGTGTTGTGCTGGATCAGACacggcagtgctgctggagttttaaacactgttgtAACTGGCTGTCCACACTCTATTAGATACTCCTACCTAGATGCTCCTCCTTTTAGATGTAAAGTATAGTCAGAGAAAGAAGCTCCTCTTTTACAGCCCAGTTGGAGGTTCTGCACCGACActtgtgtgtttaaaaactccagcagcactgccgtACCTGAGCCACGCATAccagtacaacacacactaacaccttatacaccaccaccatattAGTTTTACTGAAGTGCTACAAATGATTCACCTCCCAAATAATACCTTCTCTTTGGTGGTCCTGTGGACCAGTCCAGAACAGTGTAAATGGAGggtaataaaatatgcagagaaacagatacaggatgACAGTCTGTAATTGCAGGAATACAAAATAACACATGCTCTGTGGAGCTGATAAAATAGACAATATGTATAGAAAGAAGGAGATATTCAAATTCTATTATAAACAAGTTGTAACACTACACTGTTTGTGGGTTGGTTTTAAGGTTGAGTGAAGGTTATATTGCACCTTTGGTATTTCTGAGCAGCTTTTGcacttatttattaaatatatatttctttctacTGATACAGGCTTTTGtttagtatacagctctggaaaaaaatgaagagaccactttggtTTCTGAATTTGttgctctgattttgctatatatag

Function

symbol description
sh3yl1 Predicted to enable phosphatidylinositol binding activity. Predicted to be active in ruffle membrane. Is expressed in yolk syncytial layer. Orthologous to human SH3YL1 (SH3 and SYLF domain containing 1).

NR:

description
PREDICTED: SH3 domain-containing YSC84-like protein 1

GO: NA

KEGG:

id description
K20523 SH3YL1; SH3 domain-containing YSC84-like protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672829.1 True 2425 mRNA 0.45 10 16782537 16838704

Neighbor

gene id symbol gene type direction distance location
LOC103031040 fam150b,LOC108425626 coding upstream 15531 16760823 ~ 16767006 (+)
LOC103022442 LOC108433935,LOC100537549,LOC107592775,LOC107752809,LOC105908160 coding upstream 53471 16721225 ~ 16729066 (+)
LOC103021824 efr3b,LOC107697777,LOC107752767,LOC107592778 coding upstream 69496 16687918 ~ 16713041 (+)
ect2l NA coding upstream 174080 16594547 ~ 16608457 (+)
ccdc28a ccdc28a coding upstream 188964 16586187 ~ 16593573 (+)
LOC103043735 id2,id2a,LOC107579075,LOC107707685,LOC106566577,LOC107655320 coding downstream 678268 17516972 ~ 17519541 (+)
asap2 asap2,LOC107707693 coding downstream 915849 17754553 ~ 17876082 (+)
iah1 iah1 coding downstream 1059253 17897957 ~ 17902838 (+)
eprs eprs,LOC107662594,LOC107679779 coding downstream 1445873 18284577 ~ 18306094 (+)
LOC103038992 NA coding downstream 1469543 18308247 ~ 18315290 (+)
G81197 NA non-coding upstream 52363 16729820 ~ 16730174 (+)
G81190 NA non-coding upstream 63102 16716995 ~ 16719435 (+)
G81124 NA non-coding upstream 100605 16678648 ~ 16681932 (+)
G81106 NA non-coding upstream 161115 16619583 ~ 16621422 (+)
G81105 NA non-coding upstream 164413 16617687 ~ 16618124 (+)
G81220 NA non-coding downstream 1520 16840224 ~ 16845728 (+)
G81224 NA non-coding downstream 25407 16864111 ~ 16864542 (+)
G81243 NA non-coding downstream 140713 16979417 ~ 16982929 (+)
G81282 NA non-coding downstream 192359 17031063 ~ 17031359 (+)
G81288 NA non-coding downstream 255080 17093784 ~ 17093985 (+)
G80857 NA other upstream 1199206 15563987 ~ 15583331 (+)
LOC111193203 NA other upstream 1578750 15174535 ~ 15203787 (+)
LOC111188193 LOC108431664 other upstream 1947458 14806315 ~ 14835079 (+)
LOC111193140 NA other upstream 1979505 14788602 ~ 14803032 (+)
LOC103029370 pygb,LOC107553065,LOC107663289,LOC107671137,LOC107717055,LOC107583638 other upstream 1983933 14730508 ~ 14798604 (+)
cmpk2 cmpk2 other downstream 1188603 18027307 ~ 18037074 (+)
LOC103035760 rtkn2,rtkn2a other downstream 1621419 18460123 ~ 18469635 (+)
LOC103033848 LOC108435752 other downstream 1672918 18511622 ~ 18520947 (+)
G81704 NA other downstream 2091534 18930238 ~ 18930754 (+)
G81761 NA other downstream 2827032 19665736 ~ 19666047 (+)

Expression


Co-expression Network