LOC103047513 (gabrr2a,LOC108435431,LOC108269496,LOC103368039,LOC103138775,LOC107755784)


Basic Information

Item Value
gene id LOC103047513
gene name gabrr2a,LOC108435431,LOC108269496,LOC103368039,LOC103138775,LOC107755784
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 40070871 ~ 40120053 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022673288.1
gacagtgacgGTCCAGGCGCGATGCAGGCGGCGATGCAGCGGATGGCGGGTCCGCGCGCGCTCCGCTCGGTTTGATGCTACGCGCGTGCGACGATGCGCCGTCTCGGGCTCGCGCTCCTGCTGACGGCCACGGCGATGCGGCTCGCGCCCGCGGACGGACTGAAACTCGGGAAAGCGCGAGAGAAGCGGTGGAGCGGAGAACCGGAGAAACACGGCGGGACTCTGACGAAGAAGCCTCCTGATGTGACGAAGTCGAGGAAGCTGAAGACGGATCATCTGCTGAAGGTGGATGATCATGACTTTACTATGAGGCCAGCTTTCGGAGGTCCTGCTATTCCGGTGGGGGTGGACGTGCAGGTGGAGAGCTTGGACAGTATTTCTGAAGTAGATATGGACTTCACCATGACCTTATACCTTAGACACTACTGGAAGGACGAGCGTCTGTCCTTCGCCAGCACCACCAACAAGAGCATGACCTTCGACGGGCGTCTGGTGAAGAAGATCTGGGTGCCTGACGTGTTTTTCGTGCACTCGAAGAGATCCTTCATCCACGACACCACCACCGAGAACATCATGCTCAGGGTCTACCCAGACGGCCACGTCCTCTACAGCTTAAGGGTGACGGTTACGGCCGCCTGTAACATGGACTTCAGCCGGTTCCCTCTGGACTCTCAGACGTGTTCTCTAGAACTGGAGAGCTATGCGTACACAGATGAGGATCTGATGCTGTACTGGAAGAGTGGAGACGAGTCTCTGAGCACAGACGACAGGATCTCGCTCTCACAGTTTCTCATCCAGAAGTTTCACACTACCTCTCGTCTGGCTTTCTACAGCAGCACAGGCTGGTATAATCGGCTGTATATTAACTTCACTCTGCGGCGCCACATCTTCTTCTTCCTGCTGCAAACCTACTTCCCCGCCACGCTGATGGTCATGCTGTCCTGGGTCTCCTTCTGGATCGACCGCCGGGCCGTGCCCGCCAGAGTCTCCCTGGGCATTACCACGGTGCTCACCATGTCCACTATCATCACCGGAGTGAACGCCTCCATGCCCAGAGTCTCCTACATCAAAGCTGTGGATATTTACCTGTGGGTGAGCTTCGTCTTCGTCTTCCTCTCCGTGCTGGAGTACGCGGCCGTCAACTACCTGTCCACCGTACAGGACCGGCGAGAACGCAAGCTCAGAGACCGAGTCCGAGCTCAGTCTCTGCCGTGCACCTGCGGGATGTCTCACACCAAAACCATGATGCTGGACGGGACCTACAGCGAGGCGGACACTAACAGCCTGGCCGGATACACCGAGGCccccatggttccggaggaggAGCCGGAGAAGCAGGAGCACATGGTGGTTCACCTGTCCGTCAGCAGCGAGTCCACGGCcaccaagaagaagaagaacttcAGCATCATCCAGAACACTCACGCCATCGACAAGTACTCCCGCATGATCTTCCCCGGATCCTACATCTTCTTCAACCTCATATACTGGTCAGTGTACTGCTGATCCCGCGGCCGTCCTGCTCCTTTTGCACTCGCTCAAGTTCGGACTTAAAGACTCTGGCTGACCTGACGTCCGGTCGGCTTCTTTTAACGCTGACTTTTGGCTACGCACACGACGATTCCCCCTCCCCAGACTGGACTGCAGCTTCCCCGGCCAGCTTTCACTGGGAACACCGGGAGAGAGGAGGATTCAAACGGGAATCCCACCAGTTTTTATACAGTTCTGTACAATCCAGTGTTTGAGTTAGTCTCATTCAGAGTAGGGGTTTTATAGTataaatgctaagctaaagctaactgAGACCGATATAAGAATGTCAGAAGAACATTTATCAACATTTCGAAAAGCTTAATGGAAAGTTTTTttcacataaaaagtaacattcccaaaactagtAATCACAGCATTTAGagaacattaaaataatgttaaaagaaATTAATAGGAACATAAACGTTAATCCAGGAACGTTCTGAAAATGTTTGTGACCTAATAAGGGTTTGCGTCACAACGTTATTTGAGTGTTTATCAAGTttagcctgtaacattacatAAACATTAATCCAGGATCAAaactttattataatgttttgcaCATAACATTCTCAGCTACACAAATACtagcattaaaaaatgttaaaagaacattataagaacataaacattaatccaggaacgttctgaaaacatttgttt

Function

symbol description
gabrr2a Predicted to enable neurotransmitter receptor activity. Predicted to contribute to GABA-A receptor activity and chloride channel activity. Predicted to be involved in several processes, including chemical synaptic transmission; chloride transmembrane transport; and regulation of membrane potential. Predicted to act upstream of or within chloride transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be part of GABA-A receptor complex. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane. Is expressed in nervous system. Human ortholog(s) of this gene implicated in autistic disorder. Orthologous to human GABRR2 (gamma-aminobutyric acid type A receptor subunit rho2).

NR:

description
PREDICTED: gamma-aminobutyric acid receptor subunit rho-2-like isoform X1

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0007165 signal transduction biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004890 GABA-A receptor activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function

KEGG:

id description
K05190 GABRR; gamma-aminobutyric acid receptor subunit rho

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022673288.1 True 2199 mRNA 0.51 11 40070871 40120053

Neighbor

gene id symbol gene type direction distance location
syne3 NA coding downstream 5468 39996514 ~ 40065403 (-)
clmn LOC107583621,LOC102791389 coding downstream 130845 39874252 ~ 39940026 (-)
gsc gsc,LOC107750880,LOC107668603,LOC107671116,LOC107717065 coding downstream 378828 39685810 ~ 39692043 (-)
LOC103031521 flrt2 coding downstream 1014074 39045638 ~ 39056797 (-)
LOC103041717 galc,LOC108444013,LOC108269778,LOC107372531 coding downstream 1188917 38862143 ~ 38881954 (-)
LOC103047828 rragd,LOC108435430,LOC107755772,LOC107583676,LOC107693082,LOC108270433 coding upstream 35582 40155635 ~ 40194943 (-)
LOC103022189 bach2,LOC105015744,LOC106610754 coding upstream 121291 40241344 ~ 40280796 (-)
LOC103024062 NA coding upstream 328517 40448570 ~ 40453597 (-)
LOC103044720 fabp7a,fabp7,LOC108443406,LOC108269522,LOC107693085,LOC107723744 coding upstream 466677 40586730 ~ 40595901 (-)
LOC103044257 LOC103044257,LOC108443405,LOC108269439,LOC107680760 coding upstream 503171 40623224 ~ 40626937 (-)
G86829 NA non-coding downstream 76165 39992274 ~ 39994706 (-)
G86834 NA non-coding downstream 102067 39967771 ~ 39968804 (-)
G86821 NA non-coding downstream 137733 39885511 ~ 39933138 (-)
G86813 NA non-coding downstream 209812 39738673 ~ 39861059 (-)
G86809 NA non-coding downstream 311430 39721315 ~ 39759441 (-)
G86852 NA non-coding upstream 6820 40126873 ~ 40127155 (-)
G86842 NA non-coding upstream 33157 40153210 ~ 40155577 (-)
G86859 NA non-coding upstream 74213 40194266 ~ 40245731 (-)
G86864 NA non-coding upstream 109495 40229548 ~ 40235071 (-)
G86865 NA non-coding upstream 115174 40235227 ~ 40237536 (-)
dicer1 dicer1,LOC107552827,LOC107671118,LOC107668604 other downstream 212302 39808130 ~ 39858569 (-)
G86432 NA other downstream 2001819 37982874 ~ 38069052 (-)
nrxn3 nrxn3,LOC107755774,LOC107583487 other downstream 2969290 36588904 ~ 37101581 (-)
G85902 tfb1m other downstream 4775837 35288232 ~ 35295034 (-)
daam2 daam2 other downstream 5599266 34274391 ~ 34471605 (-)
LOC111193261 NA other upstream 413315 40533368 ~ 40536334 (-)
LOC103044865 NA other upstream 642619 40762672 ~ 40770501 (-)
LOC103040189 NA other upstream 1653014 41773067 ~ 41804888 (-)

Expression


Co-expression Network