LOC111193165


Basic Information

Item Value
gene id LOC111193165
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 1173460 ~ 1186307 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650293.1
GTTTGACACTCTAAAGCGTCTTAAATGagGTTCAGTCAGTGAAGACTGCACGACTTCTGAACTCGTTTTTGTTGGAAAGATCAGTAATAACAGCATGGATCTGAACTGGGCTGAACTGGGAGGTGTTGGGAATGACTGCAGTGGCCCCACTAAAAGCTGACGAGATCCCAGTCACAGACCTACAGCACCACATGCATTGTAAACTACTGAAAGACGCTCGTCGAGCCGCCGCTGACTGATCACAGACCAGTCACAGTCATctggcaaatatttggcatgctggatatctgacccagtcagcGACTTGGAGTCAGAAGGAGCAGCATTTATGGAAGTCCCCTGCGACTCTcagaaaggaggagagagatgAACAAACCTTCACTGCGAGCAGCGGGCGGCTGACCGTTTCTCAAAAACCAACAACACAGAACACGGCTGAGGAGTGGAGCTGGATTCTGAATCGGTTATGACCCAGTCTGGAAAGATTCAGGAGACTGGTGGTACATGTGTGGGCGGGACGTgagcaggtgtgatggatcacagtataaaccaataggaagTCGGAatagtatatgtttatacttctct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650293.1 True 588 lncRNA 0.49 5 1173460 1186307

Neighbor

gene id symbol gene type direction distance location
abraxas2 fam175b coding downstream 344445 821625 ~ 829015 (-)
LOC107197769 dtd2,LOC107197769 coding downstream 419347 750827 ~ 754113 (-)
LOC103035568 NA coding downstream 423399 739499 ~ 750061 (-)
pomt2 pomt2,LOC107719451 coding downstream 434718 726880 ~ 738742 (-)
vsx2 vsx2 coding downstream 475370 687411 ~ 698090 (-)
LOC103038386 NA coding upstream 27252 1213559 ~ 1218645 (-)
grhl1 grhl1,LOC108269933,LOC107752795 coding upstream 48038 1234345 ~ 1265414 (-)
LOC103043117 LOC108441832,LOC108269613 coding upstream 143031 1329338 ~ 1343052 (-)
LOC103039408 LOC108441822,LOC108269630 coding upstream 162641 1348948 ~ 1365774 (-)
LOC103039104 rab15,LOC103039104,LOC108441824,LOC105889812,LOC107671782,LOC107668202,LOC106608154 coding upstream 257020 1443327 ~ 1447735 (-)
G77319 NA non-coding downstream 164623 1005049 ~ 1008837 (-)
G77312 NA non-coding downstream 237531 935724 ~ 935929 (-)
G77309 NA non-coding downstream 264193 908833 ~ 909267 (-)
G77308 NA non-coding downstream 265255 907946 ~ 908205 (-)
G77302 mettl10 non-coding downstream 336297 835002 ~ 837163 (-)
G77355 NA non-coding upstream 21603 1207910 ~ 1208383 (-)
G77356 NA non-coding upstream 25061 1211368 ~ 1211723 (-)
G77344 NA non-coding upstream 44978 1231285 ~ 1233417 (-)
G77361 ywhaqb,LOC108436740,LOC107733143,LOC107752793,LOC107592764,LOC107697768,LOC105896734 non-coding upstream 91851 1278158 ~ 1318123 (-)
G77421 NA non-coding upstream 157749 1344056 ~ 1345290 (-)
lin52 lin52,LOC107594798 other downstream 447230 708644 ~ 726230 (-)
ivd ivd,LOC107719458 other downstream 637413 459202 ~ 536047 (-)
G77111 NA other downstream 790175 380700 ~ 383285 (-)
gdf7 gdf7,gdf6,gdf6a,LOC108425593,LOC107594862,LOC107674098,LOC107733118,LOC107563371,LOC107719468 other downstream 1020187 142686 ~ 153273 (-)
G76963 NA other downstream 1097354 64836 ~ 76106 (-)
G77362 NA other upstream 87430 1273737 ~ 1274170 (-)
LOC103042803 LOC108441829,LOC108269607,LOC103136210 other upstream 181790 1368097 ~ 1431244 (-)
gpx2 gpx2,LOC102306767,LOC100700650,LOC103363131 other upstream 252158 1438465 ~ 1441301 (-)
LOC103034803 ppp1r14d,LOC105908342,LOC107678771,LOC108269636,LOC101077163 other upstream 528213 1714520 ~ 1764531 (-)
srp14 srp14 other upstream 667337 1853644 ~ 1860409 (-)

Expression


Co-expression Network