srp14 (srp14)


Basic Information

Item Value
gene id srp14
gene name srp14
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 1853644 ~ 1860409 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU104677
ctgtgtgagtgagctCTGGGCTAACACCGAAGCCGACGTGTGCTTTACTGGAGCTCCACTTCAGCGCGGCTGGACTTAGAACCAGAGCTATGGTGCTGCTGGAAAACGACGCGTTTCTGACGGAGCTCACTCGCCTGTTCCAGAAATGCAGGACCAGTGGGAGTGTGGTCATCACCTTAAAGAAATATGACGGAAGGACAAAGCCTGTGCCGAGGAAAGGTCATCCAGAGACGTTTGAACCAGTTGATAACAAATGTCTCATTAGAGCTTCGGAAGGCAAGAAAAAAATTAGCACAGTGGTCAGCACCAAAGAAGTAATAAAATTCCAGATGGCTTATTCCAACTTGTTGAGAGCACACATGGATGGGCTGaagaagaaagacaaaaagagtaAAAGCAAGAAGACTAAAGCCACACAGTGATGGACAGAgtaaagaaagatagaaagaaagaggggaGCTGTAGTTCAGCTTATATCCCAGGACCATCTTACCTGTGCCACCCTCCACCAGACCCAAACCTTCATCCTCACAGCTTGCCAACCTGGACCACCTTGTTTTTTTGTCCCAACAATGGTGGCGTATCCTCATGAACATGCTTTTTCATCAAACCAGTGACGATTAAGCGTTTCGATGCAGTGCAGAGAGGGACGGCGGTCTATTACTCTGGAAAATCTTCCCATCTTCCACCTTCATTGTGTGAACGGACTCTAAATAAGAAGGTTGTGTACGGAGCATCTTTACCCCATTTAAAACTGGTTAGTTGGTCAAGACTTTGTTTGGTTAACAGCAGGATGTAAGTTGGTGCCATACGGCTGTCAGTGATTTATAGAGCTTTATTAGATGATAAGAccctttttgtttaatttgaaaACTTTTAATTTCATATGTTCAGTGGAAGCTGTCTTGATCTCCCTTCATTATGTTCAGTATTTTGTCTCTGATGTACAGATAGATCTCCATCAGTTTTCCgcagttttgtttttgaaaCTCAGGAGTAAGTAGATGTACTTTGTATATTTGAAAGAcactcattttttctttattatagatttaatacagaattagatttttttttctgttaatttaatagcCGTGCCTTTTAatgttaacacttttttttttttttagtttatttaaaccCAGACACTCCCCGACACAAATGTAGGCAATAGTTATTGCATTTGACATCATTCATCTGTCCTTAACAGTGCAATTAAGTAGAATAATGCAATCTGAATGAGAGATTAATTTATGTTAAGTCCCAAATTAAAATTATGCCCAGTCTGGTAGAGTTTACTGAGGTTTAggaattatttttctttctatatAGTGTAAAAAGGTTAtagataagtttttttttttgatgtttacaaaaaaaaagtcactgaaCAGACTGATGATTTGAAATTACAAGaaacattaataattaaataaatactatgTACATAACACTCTGTCTACAAAGAACACCATTCTGCATAACTTGCACAGAAGACTGTAGAATTAGCCGAGGCTACAGCGCTGTGTTCCTCTTGTCTGGTCTCTCTTTGGTGGACACCTGTACGCTCCTCTTGGCCCCCTCCTCCTCCAGGTAGCCCTGACGCATCAGCCGGGTGATGTACTGGAACAGCGTCTGGTGTTTCAGTGTACAAAGTAAAGACGAGCACAGTCAGTAATGATATACTGAATTATAAAGCTTTAGTTTTGACATGCAGAAAATGTCTGAAAACAGAATTTATTTACAGGgccatactagtgcatctcaaaaaaattgaatatcattagaaatttactgtatttcagttactcatttcaaaatgtgaaactcatatagatgtattacatacagagtgatctatttgaagtatttatttattttgtttgatgatgattatggcttacaaccaatgaaagccatctgctgacaacttttatggagatgcagatttcattttccagcaggacctggcacactgcccacactgccaaaagtacccattggtcttatataatattctaattttgtgagaaactgattttttgaaTATGCATGACAAATTGTTCTCACAGCTTTTAACTAACAGTTTAAAGGGAATTTACTCAAAATTAATTACACaaactaattttacattttaaggtgATTTTGCAGGAAGGGTATTAAAACAGGTAAAACACTGGATGAAATGAGAACTGTATTGTATGTGTCTCAGAATGAGCCTAATGAAATACATTGATTTAGTGCTTTCAGGTTTAATAGACTCTGGCTGAGTGTTCTTACCTTCCAGGCCTTTTCCAGTTCAGGCGTCCATTTGTCTTTCAGAATTGGCCGAACTGCGCAGATGAACTCTGCTCCTACGTACTgtgaataaacagcaga
>TU104678
ctgtgtgagtgagctCTGGGCTAACACCGAAGCCGACGTGTGCTTTACTGGAGCTCCACTTCAGCGCGGCTGGACTTAGAACCAGAGCTATGGTGCTGCTGGAAAACGACGCGTTTCTGACGGAGCTCACTCGCCTGTTCCAGAAATGCAGGACCAGTGGGAGTGTGGTCATCACCTTAAAGAAATATGACGGAAGGACAAAGCCTGTGCCGAGGAAAGGTCATCCAGAGACGTTTGAACCAGTTGATAACAAATGTCTCATTAGAGCTTCGGAAGGCAAGAAAAAAATTAGCACAGTGGTCAGCACCAAAGAAGTAATAAAATTCCAGATGGCTTATTCCAACTTGTTGAGAGCACACATGGATGGGCTGaagaagaaagacaaaaagagtaAAAGCAAGAAGACTAAAGCCACACAGTGATGGACAGAgtaaagaaagatagaaagaaagaggggaGCTGTAGTTCAGCTTATATCCCAGGACCATCTTACCTGTGCCACCCTCCACCAGACCCAAACCTTCATCCTCACAGCTTGCCAACCTGGACCACCTTGTTTTTTTGTCCCAACAATGGTGGCGTATCCTCATGAACATGCTTTTTCATCAAACCAGTGACGATTAAGCGTTTCGATGCAGTGCAGAGAGGGACGGCGGTCTATTACTCTGGAAAATCTTCCCATCTTCCACCTTCATTGTGTGAACGGACTCTAAATAAGAAGGTTGTGTACGGAGCATCTTTACCCCATTTAAAACTGGTTAGTTGGTCAAGACTTTGTTTGGTTAACAGCAGGATGTAAGTTGGTGCCATACGGCTGTCAGTGATTTATAGAGCTTTATTAGATGATAAGAccctttttgtttaatttgaaaACTTTTAATTTCATATGTTCAGTGGAAGCTGTCTTGATCTCCCTTCATTATGTTCAGTATTTTGTCTCTGATGTACAGATAGATCTCCATCAGTTTTCCgcagttttgtttttgaaaCTCAGGAGTAAGTAGATGTACTTTGTATATTTGAAAGAcactcattttttctttattatagatttaatacagaattagatttttttttctgttaatttaatagcCGTGCCTTTTAatgttaacacttttttttttttttagtttatttaaaccCAGACACTCCCCGACACAAATGTAGGCAATAGTTATTGCATTTGACATCATTCATCTGTCCTTAACAGTGCAATTAAGTAGAATAATGCAATCTGAATGAGAGATTAATTTATGTTAAGTCCCAAATTAAAATTATGCCCAGTCTGGTAGAGTTTACTGAGGTTTAggaattatttttctttctatatAGTGTAAAAAGGTTAtagataaagtcactgaaCAGACTGATGATTTGAAATTACAAGaaacattaataattaaataaatactatgTACATAACACTCTGTCTACAAAGAACACCATTCTGCATAACTTGCACAGAAGACTGTAGAATTAGCCGAGGCTACAGCGCTGTGTTCCTCTTGTCTGGTCTCTCTTTGGTGGACACCTGTACGCTCCTCTTGGCCCCCTCCTCCTCCAGGTAGCCCTGACGCATCAGCCGGGTGATGTACTGGAACAGCGTCTGGTGTTTCAGTGTACAAAGTAAAGACGAGCACAGTCAGTAATGATATACTGAATTATAAAGCTTTAGTTTACAGTAATTAGACAATAAAGCAGATATTTAATACAGAGGTGCCATAAATGAACACTAATCGTGCTAGATTTTATAAACTCCACTGTTGATATTGGTCCTCCAAGCTTAGATGACCCCTGTTGAAAGCTTAGCTGACACAAGCATACACTGTTTAAAGTATCttaatttaaaatctttttaaacataaatataatcaGTACATCTGTTTTTGACATGCAGAAAATGTCTGAAAACAGAATTTATTTACAGGgccatactagtgcatctcaaaaaaattgaatatcattagaaatttactgtatttcagttactcatttcaaaatgtgaaactcatatagatgtattacatacagagtgatctatttgaagtatttatttattttgtttgatgatgattatggcttacaaccaatgaaagccatctgctgacaacttttatggagatgcagatttcattttccagcaggacctggcacactgcccacactgccaaaagtacccattggtcttatataatattctaattttgtgagaaactgattttttgaaTATGCATGACAAATTGTTCTCACAGCTTTTAACTAACAGTTTAAAGGGAATTTACTCAAAATTAATTACACaaactaattttacattttaaggtgATTTTGCAGGAAGGGTATTAAAACAGGTAAAACACTGGATGAAATGAGAACTGTATTGTATGTGTCTCAGAATGAGCCTAATGAAATACATTGATTTAGTGCTTTCAGGTTTAATAGACTCTGGCTGAGTGTTCTTACCTTCCAGGCCTTTTCCAGTTCAGGCGTCCATTTGTCTTTCAGAATTGGCCGAACTGCGCAGATGAACTCTGCTCCTACGTACTgtgaataaacagcaga
>XM_007230356.3
CAGGTGAGCTGGAGGCAGTGGGCGgtctctgtgtgagtgagctCTGGGCTAACACCGAAGCCGACGTGTGCTTTACTGGAGCTCCACTTCAGCGCGGCTGGACTTAGAACCAGAGCTATGGTGCTGCTGGAAAACGACGCGTTTCTGACGGAGCTCACTCGCCTGTTCCAGAAATGCAGGACCAGTGGGAGTGTGGTCATCACCTTAAAGAAATATGACGGAAGGACAAAGCCTGTGCCGAGGAAAGGTCATCCAGAGACGTTTGAACCAGTTGATAACAAATGTCTCATTAGAGCTTCGGAAGGCAAGAAAAAAATTAGCACAGTGGTCAGCACCAAAGAAGTAATAAAATTCCAGATGGCTTATTCCAACTTGTTGAGAGCACACATGGATGGGCTGaagaagaaagacaaaaagagtaAAAGCAAGAAGACTAAAGCCACACAGTGATGGACAGAgtaaagaaagatagaaagaaagaggggaGCTGTAGTTCAGCTTATATCCCAGGACCATCTTACCTGTGCCACCCTCCACCAGACCCAAACCTTCATCCTCACAGCTTGCCAACCTGGACCACCTTGTTTTTTTGTCCCAACAATGGTGGCGTATCCTCATGAACATGCTTTTTCATCAAACCAGTGACGATTAAGCGTTTCGATGCAGTGCAGAGAGGGACGGCGGTCTATTACTCTGGAAAATCTTCCCATCTTCCACCTTCATTGTGTGAACGGACTCTAAATAAGAAGGTTGTGTACGGAGCATCTTTACCCCATTTAAAACTGGTTAGTTGGTCAAGACTTTGTTTGGTTAACAGCAGGATGTAAGTTGGTGCCATACGGCTGTCAGTGATTTATAGAGCTTTATTAGATGATAAGAccctttttgtttaatttgaaaACTTTTAATTTCATATGTTCAGTGGAAGCTGTCTTGATCTCCCTTCATTATGTTCAGTATTTTGTCTCTGATGTACAGATAGATCTCCATCAGTTTTCCgcagttttgtttttgaaaCTCAGGAGTAAGTAGATGTACTTTGTATATTTGAAAGAcactcattttttctttattatagatttaatacagaattagatttttttttctgttaatttaatagcCGTGCCTTTTAatgttaacacttttttttttttttagtttatttaaaccCAGACACTCCCCGACACAAATGTAGGCAATAGTTATTGCATTTGACATCATTCATCTGTCCTTAACAGTGCAATTAAGTAGAATAATGCAATCTGAATGAGAGATTAATTTATGTTAAGTCCCAAATTAAAATTATGCCCAGTCTGGTAGAGTTTA

Function

symbol description
srp14 Predicted to enable 7S RNA binding activity and endoplasmic reticulum signal peptide binding activity. Predicted to be involved in protein targeting to ER. Predicted to act upstream of or within SRP-dependent cotranslational protein targeting to membrane. Predicted to be located in cytoplasm. Predicted to be part of signal recognition particle, endoplasmic reticulum targeting. Orthologous to human SRP14 (signal recognition particle 14).

NR:

description
PREDICTED: signal recognition particle 14 kDa protein

GO:

id name namespace
GO:0006614 SRP-dependent cotranslational protein targeting to membrane biological_process
GO:0005786 signal recognition particle, endoplasmic reticulum targeting cellular_component
GO:0030942 endoplasmic reticulum signal peptide binding molecular_function
GO:0008312 7S RNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU104677 False 2379 TUCP 0.38 6 1853644 1860381
TU104678 True 2559 TUCP 0.38 6 1853644 1860381
XM_007230356.3 False 1326 mRNA 0.41 5 1854934 1860409

Neighbor

gene id symbol gene type direction distance location
bub1b NA coding downstream 156646 1690210 ~ 1696998 (-)
pak6 pak6,LOC108269614,LOC108430618,LOC100536197,LOC107663165,LOC108237117 coding downstream 172631 1650846 ~ 1681013 (-)
inafm2 inafm2 coding downstream 276301 1574260 ~ 1577343 (-)
LOC103038790 LOC108430634 coding downstream 356301 1481744 ~ 1497343 (-)
LOC107197727 NA coding downstream 387245 1463238 ~ 1466399 (-)
pld4 pld4 coding upstream 1396 1861805 ~ 1875477 (-)
cep170b NA coding upstream 18861 1879270 ~ 1910962 (-)
akt1 akt1 coding upstream 55623 1916032 ~ 1986853 (-)
siva1 siva1 coding upstream 161874 2022283 ~ 2025811 (-)
adssl1 adssl1,LOC107703625,LOC107678758,LOC107571830 coding upstream 169973 2030382 ~ 2041286 (-)
G77596 NA non-coding downstream 21395 1753684 ~ 1832249 (-)
G77622 LOC108430640 non-coding downstream 33662 1817855 ~ 1819982 (-)
G77586 NA non-coding downstream 203052 1609584 ~ 1650592 (-)
G77442 NA non-coding downstream 280098 1573324 ~ 1573546 (-)
G77440 NA non-coding downstream 289687 1560949 ~ 1563957 (-)
G77619 NA non-coding upstream 53151 1913560 ~ 1922528 (-)
G77626 NA non-coding upstream 78476 1938885 ~ 1941615 (-)
G77630 NA non-coding upstream 147660 2008069 ~ 2027966 (-)
G77641 dnajc17 non-coding upstream 227208 2087617 ~ 2146273 (-)
G77639 NA non-coding upstream 267116 2127525 ~ 2164947 (-)
LOC103034803 ppp1r14d,LOC105908342,LOC107678771,LOC108269636,LOC101077163 other downstream 89113 1714520 ~ 1764531 (-)
gpx2 gpx2,LOC102306767,LOC100700650,LOC103363131 other downstream 412343 1438465 ~ 1441301 (-)
LOC103042803 LOC108441829,LOC108269607,LOC103136210 other downstream 422400 1368097 ~ 1431244 (-)
G77362 NA other downstream 579474 1273737 ~ 1274170 (-)
lin52 lin52,LOC107594798 other downstream 1127414 708644 ~ 726230 (-)
LOC111193168 NA other upstream 182550 2042959 ~ 2047241 (-)
gchfr gchfr other upstream 290379 2150788 ~ 2155348 (-)
G77656 NA other upstream 329904 2190313 ~ 2190653 (-)
LOC103029757 LOC108430670,LOC108269994 other upstream 1103615 2964024 ~ 3044763 (-)
bmf bmf other upstream 1315389 3175798 ~ 3206686 (-)

Expression


Co-expression Network