G77630


Basic Information

Item Value
gene id G77630
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 2008069 ~ 2027966 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU104697
catgGTTATATATTTGACACCACATGTTTATTTCAATTTGTATTTCATATAAAGTTCTAGTTAAaccttttaacattttgttaagtgttatattgttattttagcGCTGATGATTGTGAATTCTGTCTGCGACCTGCATTTACTCCAGCGATCTCAGGATTACATATATTTCCCTTTGAGTGCTGCTGCATGTAATGATTGTCAACAGAACATCATATGAGATTATTTATCCAGTTTttcttctttgattttgctGATGTTGTTTACTCCTGAATAAACGTTTCTCACAaaaaaaaaaaaaaaagaaggaaattcAACCAGTGTTTCAAATCAAACAGATTGTCACCTACATTCACTAGGGCACTAACATCGAAGCATTCGTTTCCTATAAAATATACGTTTCTTatcaaaaattatattaaatctaATGGCACTTCTACAAAGTCTATTAAAAACGTTCTCCATTTAGTAGCATCTTTCATTACTCAAGTCAAACTCGTATAGAGAGATACAGTAAAATCTTTGCACGAGAAagaaatcataaataaatatgtctTATGATTATACAATTTCACAGTCTGAACCTCAGAAGACGATATTCCAGTATTATAAGGTTTATAGTAATATGTGGCTTGCCAGGTTTGCGGAGTTACTGAGAGACAGTACTGAGAAATTCATCCAATTTGAAccatgatttgatttttttgagcATGTAGAGTTTTGATTAGTGTAGGATAGTGTAGGATTGATTAGTGTCGATGCTTTGTCTATGTGCATTTTGCTGGTCGCAGGTGAAAGATCAACTCTACGATCACTTCTACTACTGGTCGGCCGCTGATCACTTACGTATGGCTATGGCAACTGGATAGGAAGTGGccttaaatgtaagaaatggaCCTTAAGAGGTGTTAAAGTCTTCCTAAGTACCATAACATGCCTATTTTAACCATTATACAACATcatctgtttattttcatattaagCCCTATTTGAATGGGATTAGTTTTATGTGTGGAGTTGgggtaatgtaattattaccAGACTTTCTGTTCGATTTTAGTCTGTATCAAGTCAATCCATGATTCGGTATGAGACAGAAAGTTGATACTTGATGTTGTTCAAGACATAAAAGTCATAAAGCTCATTTTCAACCTAAATTTTCATTATACCATAAAAGGTAATAAATAGGAAGCAACAGACTGAGTCATTTGTGCTTGTTGTGggtggtgtggtgcagtggataacaccaccaccacctgtTTATGAGCTACTACATCATGAGGGAGActtgggttcaattccaggtctgggtgaaaaaaaatgctgtgcTATTCcaaaataagagtccttgggcaagactccaaacactacattggcccaactcTGTAACAGGAAATACATGtaatagaaatgtaaaattacattactccACCACTCCATGTAAAATTAAATCTATCCAAAAGGAGCTTTAGCCtgatttcatattcatatttttt

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase rnf213-alpha-like isoform X2

GO:

id name namespace
GO:0072330 monocarboxylic acid biosynthetic process biological_process
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0046031 ADP metabolic process biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006090 pyruvate metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0006096 glycolytic process biological_process
GO:1901292 nucleoside phosphate catabolic process biological_process
GO:0051186 obsolete cofactor metabolic process biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0051188 obsolete cofactor biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009108 obsolete coenzyme biosynthetic process biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0017144 drug metabolic process biological_process
GO:1901361 organic cyclic compound catabolic process biological_process
GO:0046939 nucleotide phosphorylation biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0006732 obsolete coenzyme metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0006733 obsolete oxidoreduction coenzyme metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0019359 nicotinamide nucleotide biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0019362 pyridine nucleotide metabolic process biological_process
GO:0019363 pyridine nucleotide biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0009132 nucleoside diphosphate metabolic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0046394 carboxylic acid biosynthetic process biological_process
GO:0019637 organophosphate metabolic process biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0044270 cellular nitrogen compound catabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0044281 small molecule metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0044283 small molecule biosynthetic process biological_process
GO:0090407 organophosphate biosynthetic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:0046685 response to arsenic-containing substance biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:1901137 carbohydrate derivative biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0072524 pyridine-containing compound metabolic process biological_process
GO:0072525 pyridine-containing compound biosynthetic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009166 nucleotide catabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0046700 heterocycle catabolic process biological_process
GO:0006793 phosphorus metabolic process biological_process
GO:0046434 organophosphate catabolic process biological_process
GO:0006796 phosphate-containing compound metabolic process biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0019439 aromatic compound catabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0032787 monocarboxylic acid metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0034655 nucleobase-containing compound catabolic process biological_process
GO:0034404 nucleobase-containing small molecule biosynthetic process biological_process
GO:0046496 nicotinamide nucleotide metabolic process biological_process
GO:0016052 carbohydrate catabolic process biological_process
GO:0016053 organic acid biosynthetic process biological_process

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis
ko00030 Pentose phosphate pathway
ko00680 Methane metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU104697 True 1496 lncRNA 0.34 2 2008069 2027966

Neighbor

gene id symbol gene type direction distance location
akt1 akt1 coding downstream 21216 1916032 ~ 1986853 (-)
cep170b NA coding downstream 97107 1879270 ~ 1910962 (-)
pld4 pld4 coding downstream 132592 1861805 ~ 1875477 (-)
bub1b NA coding downstream 311071 1690210 ~ 1696998 (-)
pak6 pak6,LOC108269614,LOC108430618,LOC100536197,LOC107663165,LOC108237117 coding downstream 327056 1650846 ~ 1681013 (-)
adssl1 adssl1,LOC107703625,LOC107678758,LOC107571830 coding upstream 2416 2030382 ~ 2041286 (-)
LOC103031516 inf2 coding upstream 19342 2047308 ~ 2061137 (-)
LOC111188180 inf2,LOC103357023,LOC104924786 coding upstream 33492 2061458 ~ 2067025 (-)
LOC103030988 NA coding upstream 101232 2129198 ~ 2134435 (-)
LOC103039711 NA coding upstream 193542 2221508 ~ 2232432 (-)
G77626 NA non-coding downstream 66454 1938885 ~ 1941615 (-)
G77619 NA non-coding downstream 85541 1913560 ~ 1922528 (-)
G77596 NA non-coding downstream 175820 1753684 ~ 1832249 (-)
G77622 LOC108430640 non-coding downstream 188087 1817855 ~ 1819982 (-)
G77586 NA non-coding downstream 357477 1609584 ~ 1650592 (-)
G77641 dnajc17 non-coding upstream 59651 2087617 ~ 2146273 (-)
G77639 NA non-coding upstream 99559 2127525 ~ 2164947 (-)
G77655 NA non-coding upstream 156020 2183986 ~ 2185863 (-)
G77683 NA non-coding upstream 331765 2359731 ~ 2359936 (-)
G77684 NA non-coding upstream 364910 2392876 ~ 2393116 (-)
srp14 srp14 other downstream 147660 1853644 ~ 1860409 (-)
LOC103034803 ppp1r14d,LOC105908342,LOC107678771,LOC108269636,LOC101077163 other downstream 243538 1714520 ~ 1764531 (-)
gpx2 gpx2,LOC102306767,LOC100700650,LOC103363131 other downstream 566768 1438465 ~ 1441301 (-)
LOC103042803 LOC108441829,LOC108269607,LOC103136210 other downstream 576825 1368097 ~ 1431244 (-)
G77362 NA other downstream 733899 1273737 ~ 1274170 (-)
LOC111193168 NA other upstream 14993 2042959 ~ 2047241 (-)
gchfr gchfr other upstream 122822 2150788 ~ 2155348 (-)
G77656 NA other upstream 162347 2190313 ~ 2190653 (-)
LOC103029757 LOC108430670,LOC108269994 other upstream 936058 2964024 ~ 3044763 (-)
bmf bmf other upstream 1147832 3175798 ~ 3206686 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G184801 NA non-coding NW_025048164.1 JAEQBD010000509.1 424065 ~ 425824 (+)