gchfr (gchfr)


Basic Information

Item Value
gene id gchfr
gene name gchfr
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 2150788 ~ 2155348 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU104716
CTGAGGGAGAGCGCGCGGCGTGGAGCAGGACACCTAAACCATCCTCCAGACATCAGCCCGAGACCACAGCCCGGCATGCCTTACCTCCTCATCAGCACCCAGATCCGCCTGGAGACTGGGCCCACCATGGTAGGAGACGAGTTCTCAGATCCTTCCATCATGAGCTATTTGGGAGCCAGGAAAACCACCATGCTGGGCAACAACTTTTCAGAATACCACGTGGATGAACCTCCTCGAATGGTTCTGGACAAGCTGGAGAAGATCGGATATAAAGTCGTGACGATGACGGGGGTCGGCCAGACCCTGGTGTGGTGCCTTCACAAAGAGTCCAGCGACCTCTGATAACCTCCAGCGGATCATTCTctgttgcacttttttttttttagttttttttttagtttttgtaaaaatgtgagAGTCTATAGTGTTTACACTACCAGGTGAGGGTATGAGGTCACGGTCCAGGTTCTGGTCCATGATCTTAttcagtgatgatgatgatgatgatgatgatgatgagataCTGGGTTGGGGGGGGACCAGTATTATACATGTATTAAAAATtgttttcattgtgttttttgtagttttgctACTAGAACTCTTATGCTAAAGCTGCACATTAAATATGCcttattaaaaaatgacaacGCTGGTGTTTAActtaattaaaaacactgtgttacaCCAGTTTACACTTTATTTGAATCTGCTTTTTCTCTCAAATCAACTTCATTACATGAATTACTGCCATTTTTATTAGTATGTTGTTTTCATGATGTACAAAAGAAagattaatcattttttattgcAAAATCATCCTGATGTTGAACTCGTTCAAAGAGAAACTCAACTCAGACTTTATTGTATTGCATTGACTTGTTGAAACGGGTTCGTTTTTGAAATGCTTGATTTGTCCATGTGCTCTGTTGTTTACAGTCTATTCCTCTGCTAAATTTAGTCTTATGTAAACTATACGCTTGATCATGTCCGTgatattacagaataaaagttgCCATTCATAAAACTGACAA
>TU104718
CTGAGGGAGAGCGCGCGGCGTGGAGCAGGACACCTAAACCATCCTCCAGACATCAGCCCGAGACCACAGCCCGGCATGCCTTACCTCCTCATCAGCACCCAGATCCGCCTGGAGACTGGGCCCACCATGGTAGGAGACGAGTTCTCAGATCCTTCCATCATGAGCTATTTGGGAGCCAGGAAAACCACCATGCTGGGCAACAACTTTTCAGAATACCACGTGGATGAACCTCCTCGAATGGTTCTGGACAAGCTGGAGAAGATCGGATATAAAGTCGTGACGATGACGGGGGTCGGCCAGACCCTGGTGTGGTGCCTTCACAAAGAGTCCAGCGACCTCTGATAACCTCCAGCGGATCATTCTctgttgcacttttttttttttagttttttttttagtttttgtaaaaatgtgagAGTCTATAGTGTTTACACTACCAGGTGAGGGTATGAGGTCACGGTCCAGGTTCTGGTCCATGATCTTAttcagtgatgatgatgatgatgatgatgatgatgagataCTGGGTTGGGGGGGGACCAGTATTATACATGTATTAAAAATtgttttcattgtgttttttgtagttttgctACTAGAACTCTTATGCTAAAGCTGCACATTAAATATGCcttattaaaaaatgacaacGCTGGTGTTTAActtaattaaaaacactgtgttacaCCAGTTTACACTTTATTTGAATCTGCTTTTTCTCTCAAATCAACTTCATTACATGAATTACTGC
>TU104721
CTGAGGGAGAGCGCGCGGCGTGGAGCAGGACACCTAAACCATCCTCCAGACATCAGCCCGAGACCACAGCCCGGCATGCCTTACCTCCTCATCAGCACCCAGATCCGCCTGACTGGGCCCACCATGGTAGGAGACGAGTTCTCAGATCCTTCCATCATGAGCTATTTGGGAGCCAGGAAAACCACCATGCTGGGCAACAACTTTTCAGAATACCACGTGGATGAACCTCCTCGAATGGTTCTGGACAAGCTGGAGAAGATCGGATATAAAGTCGTGACGATGACGGGGGTCGGCCAGACCCTGGTGTGGTGCCTTCACAAAGAGTCCAGCGACCTCTGATAACCTCCAGCGGATCATTCTctgttgcacttttttttttttagttttttttttagtttttgtaaaaatgtgagAGTCTATAGTGTTTACACTACCAGGTGAGGGTATGAGGTCACGGTCCAGGTTCTGGTCCATGATCTTAttcagtgatgatgatgatgatgatgatgatgatgagataCTGGGTTGGGGGGGGACCAGTATTATACATGTATTAAAAATtgttttcattgtgttttttgtagttttgctACTAGAACTCTTATGCTAAAGCTGCACATTAAATATGCcttattaaaaaatgacaacGCTGGTGTTTAActtaattaaaaacactgtgttacaCCAGTTTACACTTTATTTGAATCTGCTTTTTCTCTCAAATCAACTTCATTACATGAATTACTGCCATTTTTATTAGTATGTTGTTTTCATGATGTACAAAAGAAagattaatcattttttattgcAAAATCATCCTGATGTTGAACTCGTTCAAAGAGAAACTCAACTCAGACTTTATTGTATTGCATTGACTTGTTGAAACGGGTTCGTTTTTGAAATGCTTGATTTGTCCATGTGCTCTGTTGTTTACAGTCTATTCCTCTGCTAAATTTAGTCTTATGTAAACTATACGCTTGATCATGTCCGTgatattacagaataaaagttgCCATTCATAAAACTGACAATGGTCAGTTACTGACTACCTTTAGAACAGGCCAGACGTCCAGCAGGTCTGACAGTAGAATATGGTCACTTTGCTCATACATAGTCCATGCTAAACATCTTTTCTAAGGCCATCACTGGAGAGTATCGGAGTCTCAGGACATAACAGTATAGACAATTATTTGCTTTTATCAAACAATTTAAGAAAACATGGCCTAAAGCAGAATCACATGCacagtttatttaaacacatataCAGTGTGGGTCTAAACAGTGTATTTTGCCCTCGTGTttgctaggggtgtgccatatcgtatcaagcgcaataatatcaccaacatttttgaatatggtgaacatTATTATACCCTTAAAAAtaatggtgccata
>XM_007230345.3
GCATTCTCCTGAGGGAGAGCGCGCGGCGTGGAGCAGGACACCTAAACCATCCTCCAGACATCAGCCCGAGACCACAGCCCGGCATGCCTTACCTCCTCATCAGCACCCAGATCCGCCTGGAGACTGGGCCCACCATGGTAGGAGACGAGTTCTCAGATCCTTCCATCATGAGCTATTTGGGAGCCAGGAAAACCACCATGCTGGGCAACAACTTTTCAGAATACCACGTGGATGAACCTCCTCGAATGGTTCTGGACAAGCTGGAGAAGATCGGATATAAAGTCGTGACGATGACGGGGGTCGGCCAGACCCTGGTGTGGTGCCTTCACAAAGAGTCCAGCGACCTCTGATAACCTCCAGCGGATCATTCTctgttgcacttttttttttttagttttttttttagtttttgtaaaaatgtgagAGTCTATAGTGTTTACACTACCAGGTGAGGGTATGAGGTCACGGTCCAGGTTCTGGTCCATGATCTTAttcagtgatgatgatgatgatgatgatgatgatgagataCTGGGTTGGGGGGGGACCAGTATTATACATGTATTAAAAATtgttttcattgtgttttttgtagttttgctACTAGAACTCTTATGCTAAAGCTGCACATTAAATATGCcttattaaaaaatgacaacGCTGGTGTTTAActtaattaaaaacactgtgttacaCCAGTTTACACTTTATTTGAATCTGCTTTTTCTCTCAAATCAACTTCATTACATGAATTACTGCCATTTTTATTAGTATGTTGTTTTCATGATGTACAAAAGAAagattaatcattttttattgcAAAATCATCCTGATGTTGAACTCGTTCAAAGAGAAACTCAACTCAGACTTTATTGTATTGCATTGACTTGTTGAAACGGGTTCGTTTTTGAAATGCTTGATTTGTCCATGTGCTCTGTTGTTTACAGTCTATTCCTCTGCTAAATTTAGTCTTATGTAAACTATACGCTTGATCATGTCCGTgatattacagaataaaagttgCCATTCATAAAACTGA
>XM_007230346.3
GCATTCTCCTGAGGGAGAGCGCGCGGCGTGGAGCAGGACACCTAAACCATCCTCCAGACATCAGCCCGAGACCACAGCCCGGCATGCCTTACCTCCTCATCAGCACCCAGATCCGCCTGACTGGGCCCACCATGGTAGGAGACGAGTTCTCAGATCCTTCCATCATGAGCTATTTGGGAGCCAGGAAAACCACCATGCTGGGCAACAACTTTTCAGAATACCACGTGGATGAACCTCCTCGAATGGTTCTGGACAAGCTGGAGAAGATCGGATATAAAGTCGTGACGATGACGGGGGTCGGCCAGACCCTGGTGTGGTGCCTTCACAAAGAGTCCAGCGACCTCTGATAACCTCCAGCGGATCATTCTctgttgcacttttttttttttagttttttttttagtttttgtaaaaatgtgagAGTCTATAGTGTTTACACTACCAGGTGAGGGTATGAGGTCACGGTCCAGGTTCTGGTCCATGATCTTAttcagtgatgatgatgatgatgatgatgatgatgagataCTGGGTTGGGGGGGGACCAGTATTATACATGTATTAAAAATtgttttcattgtgttttttgtagttttgctACTAGAACTCTTATGCTAAAGCTGCACATTAAATATGCcttattaaaaaatgacaacGCTGGTGTTTAActtaattaaaaacactgtgttacaCCAGTTTACACTTTATTTGAATCTGCTTTTTCTCTCAAATCAACTTCATTACATGAATTACTGCCATTTTTATTAGTATGTTGTTTTCATGATGTACAAAAGAAagattaatcattttttattgcAAAATCATCCTGATGTTGAACTCGTTCAAAGAGAAACTCAACTCAGACTTTATTGTATTGCATTGACTTGTTGAAACGGGTTCGTTTTTGAAATGCTTGATTTGTCCATGTGCTCTGTTGTTTACAGTCTATTCCTCTGCTAAATTTAGTCTTATGTAAACTATACGCTTGATCATGTCCGTgatattacagaataaaagttgCCATTCATAAAACTGA

Function

symbol description
gchfr Predicted to enable GTP cyclohydrolase binding activity. Predicted to be involved in negative regulation of GTP cyclohydrolase I activity. Predicted to act upstream of or within negative regulation of biosynthetic process. Predicted to be located in cytosol and nuclear membrane. Predicted to be active in cytoplasm and nucleus. Is expressed in liver. Orthologous to human GCHFR (GTP cyclohydrolase I feedback regulator).

NR:

description
PREDICTED: GTP cyclohydrolase 1 feedback regulatory protein

GO:

id name namespace
GO:0009890 negative regulation of biosynthetic process biological_process
GO:0005829 cytosol cellular_component
GO:0031965 nuclear membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU104716 False 1034 TUCP 0.41 3 2151155 2155340
TU104718 False 751 TUCP 0.44 3 2151438 2155340
TU104721 True 1398 TUCP 0.40 3 2150788 2155340
XM_007230345.3 False 1039 mRNA 0.41 3 2151158 2155348
XM_007230346.3 False 1036 mRNA 0.41 3 2151158 2155348

Neighbor

gene id symbol gene type direction distance location
LOC103030988 NA coding downstream 16353 2129198 ~ 2134435 (-)
LOC111188180 inf2,LOC103357023,LOC104924786 coding downstream 83763 2061458 ~ 2067025 (-)
LOC103031516 inf2 coding downstream 89651 2047308 ~ 2061137 (-)
adssl1 adssl1,LOC107703625,LOC107678758,LOC107571830 coding downstream 109502 2030382 ~ 2041286 (-)
siva1 siva1 coding downstream 124977 2022283 ~ 2025811 (-)
LOC103039711 NA coding upstream 66160 2221508 ~ 2232432 (-)
thbs1 thbs1,LOC108270370,LOC107568499,LOC107687209,LOC107719693,LOC107743901,LOC107678760 coding upstream 161279 2316627 ~ 2331376 (-)
acp7 acp7,papl coding upstream 276807 2432155 ~ 2457592 (-)
LOC103025843 LOC103025843,LOC108430663 coding upstream 322788 2478136 ~ 2505873 (-)
LOC111193124 LOC108270491,LOC108234815 coding upstream 518068 2673416 ~ 2752256 (-)
G77641 dnajc17 non-coding downstream 4515 2087617 ~ 2146273 (-)
G77630 NA non-coding downstream 122822 2008069 ~ 2027966 (-)
G77626 NA non-coding downstream 209173 1938885 ~ 1941615 (-)
G77619 NA non-coding downstream 228260 1913560 ~ 1922528 (-)
G77596 NA non-coding downstream 318539 1753684 ~ 1832249 (-)
G77655 NA non-coding upstream 28638 2183986 ~ 2185863 (-)
G77683 NA non-coding upstream 204383 2359731 ~ 2359936 (-)
G77684 NA non-coding upstream 237528 2392876 ~ 2393116 (-)
G77695 NA non-coding upstream 293225 2448573 ~ 2469056 (-)
G77696 LOC108430664,LOC108269450,LOC107567345,LOC107678748,LOC104954960,LOC107084056 non-coding upstream 296074 2451422 ~ 2477759 (-)
LOC111193168 NA other downstream 103547 2042959 ~ 2047241 (-)
srp14 srp14 other downstream 290379 1853644 ~ 1860409 (-)
LOC103034803 ppp1r14d,LOC105908342,LOC107678771,LOC108269636,LOC101077163 other downstream 386257 1714520 ~ 1764531 (-)
gpx2 gpx2,LOC102306767,LOC100700650,LOC103363131 other downstream 709487 1438465 ~ 1441301 (-)
LOC103042803 LOC108441829,LOC108269607,LOC103136210 other downstream 719544 1368097 ~ 1431244 (-)
G77656 NA other upstream 34965 2190313 ~ 2190653 (-)
LOC103029757 LOC108430670,LOC108269994 other upstream 808676 2964024 ~ 3044763 (-)
bmf bmf other upstream 1020450 3175798 ~ 3206686 (-)
G77892 NA other upstream 1142234 3297582 ~ 3348989 (-)
prkd1 prkd1,LOC107590910,LOC107719483,LOC107733145 other upstream 1489749 3645097 ~ 3714357 (-)

Expression


Co-expression Network