LOC111188180 (inf2,LOC103357023,LOC104924786)


Basic Information

Item Value
gene id LOC111188180
gene name inf2,LOC103357023,LOC104924786
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 2061458 ~ 2067025 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672587.1
tatttgttgaagtgaaaaatattatttacatttacagtagaATCTGATAGGATACATTAGGAAACATTAGCAAGTCAACTAGACCGTatgaaaatatagatttttgtaAAGCAATATTATGTTTTTCAACACTGCACTGATCAGTACTAATGTccgatttttctttttccagttCCTCCAGCGTTCCTCCACCATTTCCATCATCATGTCGATCAAATCGGAAAAAGTCCAGAAGAAATGGGCGGCAGTGAAAGGTCGCCTGGGGTCATCTCAGGAGTCGGACGGTCCCCAGGAGGCGAACCTGGAGAACGCAGACGCCGAGTTGTGCATCCGTCTGCTGCAGGTGCCCACCGTGGTGAATTACTCCGGGCTGAAGAAGCGGCTGGAGGGCAGCGATCAGACGTGGATGGTGCAGTTTCTGGAGCTCTCAGGGCTGGACCTTCTCCTGGAGGCCCTGGACAGGCTCTCAGGACGCGGGTGCTCTCGGATTGCCGATGCCCTGCTGCAGTTAACCTGTGTGAACTGTGTGAGAGCGGTCATGAACTCCTCTGCTGGGATTCACTTCATCGTGGAGAATGAGGGATACGTGCGCAAGCTTTCACAAGCTCTGGACACCTCAAACACCATGGTGAAGAAGCAGGTGTTTGAGCTGCTGGCTGCTCTCAGCATGTTCAACACAGAGGGACACAGACTGGCCCTGGATGCTCTGGACCATTATAAGGCTGTGAAGACTCAGCAGTATCGCTTCAGTGTGATCATGAATGAGCTGGAAAGCACAGATAACGTCCCCTACATGGTGACCCTCCTCAGTGTGATCAACGCCCTCCTCTTCAGCACTGATGACCTCCGGGAAAGAGACAAAATGCGCAAGGAGTTCATCGgtTTGCAGCTGCTTGATGTTCTGCCAAAGCTGAGGTGA

Function

symbol description
inf2 Acts upstream of or within several processes, including glomerular filtration; glomerular visceral epithelial cell development; and slit diaphragm assembly. Is expressed in several structures, including blood vessel; digestive system; eye; pronephros; and somite. Used to study glomerulosclerosis. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease dominant intermediate E and focal segmental glomerulosclerosis 5. Orthologous to human INF2 (inverted formin 2).

NR:

description
PREDICTED: inverted formin-2 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672587.1 True 919 mRNA 0.50 4 2061458 2067025

Neighbor

gene id symbol gene type direction distance location
LOC103031516 inf2 coding downstream 321 2047308 ~ 2061137 (-)
adssl1 adssl1,LOC107703625,LOC107678758,LOC107571830 coding downstream 20172 2030382 ~ 2041286 (-)
siva1 siva1 coding downstream 35647 2022283 ~ 2025811 (-)
akt1 akt1 coding downstream 74605 1916032 ~ 1986853 (-)
cep170b NA coding downstream 150496 1879270 ~ 1910962 (-)
LOC103030988 NA coding upstream 62173 2129198 ~ 2134435 (-)
LOC103039711 NA coding upstream 154483 2221508 ~ 2232432 (-)
thbs1 thbs1,LOC108270370,LOC107568499,LOC107687209,LOC107719693,LOC107743901,LOC107678760 coding upstream 249602 2316627 ~ 2331376 (-)
acp7 acp7,papl coding upstream 365130 2432155 ~ 2457592 (-)
LOC103025843 LOC103025843,LOC108430663 coding upstream 411111 2478136 ~ 2505873 (-)
G77630 NA non-coding downstream 33492 2008069 ~ 2027966 (-)
G77626 NA non-coding downstream 119843 1938885 ~ 1941615 (-)
G77619 NA non-coding downstream 138930 1913560 ~ 1922528 (-)
G77596 NA non-coding downstream 229209 1753684 ~ 1832249 (-)
G77641 dnajc17 non-coding upstream 20592 2087617 ~ 2146273 (-)
G77639 NA non-coding upstream 60500 2127525 ~ 2164947 (-)
G77655 NA non-coding upstream 116961 2183986 ~ 2185863 (-)
G77683 NA non-coding upstream 292706 2359731 ~ 2359936 (-)
G77684 NA non-coding upstream 325851 2392876 ~ 2393116 (-)
LOC111193168 NA other downstream 14217 2042959 ~ 2047241 (-)
srp14 srp14 other downstream 201049 1853644 ~ 1860409 (-)
LOC103034803 ppp1r14d,LOC105908342,LOC107678771,LOC108269636,LOC101077163 other downstream 296927 1714520 ~ 1764531 (-)
gpx2 gpx2,LOC102306767,LOC100700650,LOC103363131 other downstream 620157 1438465 ~ 1441301 (-)
LOC103042803 LOC108441829,LOC108269607,LOC103136210 other downstream 630214 1368097 ~ 1431244 (-)
gchfr gchfr other upstream 83763 2150788 ~ 2155348 (-)
G77656 NA other upstream 123288 2190313 ~ 2190653 (-)
LOC103029757 LOC108430670,LOC108269994 other upstream 896999 2964024 ~ 3044763 (-)
bmf bmf other upstream 1108773 3175798 ~ 3206686 (-)
G77892 NA other upstream 1230557 3297582 ~ 3348989 (-)

Expression


Co-expression Network