G77586


Basic Information

Item Value
gene id G77586
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 1609584 ~ 1650592 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU104641
ccaccaagaaggaccgaccacatccaacaggattaactgtggacactgtaagaggaagctgtctgaaagggatgttcaaaggggtgctaacccagattgaatccaaaaaacataaaaccacggctgatcaaatcacggcagaattcaaataaataaattattttggtctaaaaccacttgtttcagtttcattgtccaacccctgtatatacagtatatatatatatatatatatatatatgatatataggAAGGTGACAGATGGTTGTTATCCTGAGGATATCACCTACAAACAAAGCCTAGacactttattatacacacataaGTGTGTGAGCTGagtaaaaaagtgtgaaactttATCAGTGATATCAGTGATATTAGTGATATCTATGATATATCAGAGGGACTGTAAGAGAGGAAGACTCTCtgagaagaaaagaaggaaagaaaagaaaggaaggagCTGGACGGACAGATGTTGTTTTCCGACCAGCACAGAGATGCTACTGCACCTTGTCCAGGATCAACTTGCATGCCTCTACAGTGGCACACATGCAGCAGGCTgatttttttggattattgcaaaataataaaaaaaagtgactttttGACGTCGACTGTCGTTCTGCTACTGTCGTGGCGGCTGTTTTTAAATGAGCCATTGGAACCAACTGaatatgaataatgaataatgattcagctatttattgatttattagtttttttttgtttgtttgtttttttaagattgaTTGACCccacttgcttttttttttttttttttttgcttttttttaaggtgtAGTGAATTGTTTGTAAAATTTGTGGAAATTGTACATATTAAACTATCGCATCTCAAGAGCTTCAGAGGTTGatttttgttcgttttttttgGAGAAACTGAGGAAtaatgtactgtacatacaaTCACATTAGGAGTTGACTCTGTATTTGCATTCTGATTattcatgattattattattattgattaattatgAGTGGGAGTGGTGGAAAGGAACATGACATACTGTCATACTGTAAGTCACCTGGCTTCAGTCAGTGCttttgtttacagtgtgtgtgtgtgtgtgtgtgtgtgtgtctttgtgtgtatgtttacaCCTGGAGTGTaacataaagctctggaaaaaaattagagaccacttaaaaatgatgagtttctttgattttacctcttaaaaattgaaaacctctggaatatgatcaagaggaagatggatgatcacaaaccatcaaaccaaaagcagtgtgtaagactggtggaggagaacatgatgccaagatgcatgaaaaaaaactgtgattaaaaaacaggtttattccaccaaatattgattatttctgaactcttaaaactttatgaatatgaacttgttttctctgcattatttgaggtctgaaagctctgcatcttttttgttatttcagtcatttctcattttctgtaaataaatgctctaaatgagaatatttttatttggaatttgggagaaatgttgtctgtagtttatagaataaaacaacaatgttcattttactcaaacttaaacctataaatagcaaaatcagagaaactgattcagaaactgaagtggtctcttcattttttccagagctgaatatgtTGGCATTTCCACACCCAAACTGTTGTActgtgattgattgattgactgacttACTAacttccatgtttttttttcagcagtgtgtttatgtgtgtgtgtgtgtgtgtgtgtgtgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgctgctAAGGAACGTGAGACTGTGATTGTGATCATGTTTGTGTAGGTAAAGCACACTGGTTTGGTTCATGCTGATTGGTCCGTCACCAGCCAATACAAATCTGTACATCATTTCTGAATTCTTTCCACAGTTCAGCAGGATTCATTGTGGCTGTATTTTTATGTCGGCTCTTCATGACGAAAGAGAAATGAAATAtaactttaattttgtaaaatgaataaaaaggatGCATATTGAATATTCAGTGCTGTGCAGTGGATTACctgctttctgtctttctttcactttttttaccacacacttatatatatatatataaatacatgccTAGAGGATGTGATGTttgtttattactttattttataactttaatttacagtatatacagtatgtacgtgtatatatttatgcagctctggaaaaaaataagagagcacttaaaaatgatgagattatttgattttacccaattaaaaaaaaaacctctggaatataatcaagaggaagatggatgatcacaaaccatcaaaccaccaaactgaactgcttgaatttttgcaccaggagtaaagcagcgtaaagttatccaaaagcagtgtgtaagactggtggaggagaacatgatgccaagatgcatgaaaaaaaactgtgattaaaaaccaccagggttattccaccaaatattgatttctgaactcttaaaactttatgaatatgaacttgttttctttgcattatttgaggtctgaaagctctgcatcttttctgttttttttttttttcagccatttctcattttctgtaaataaatgctctaaatgagaaatgttttatttggagtttgggagaaatgttgtttgtagtttatagaataaaacaacaatgttcattttactcaaacataaacttataaatagcaaaatcaaggaaacttactcagaaactgaagtggtctcttttttccagagctgtatatccacacatatatatatatgattgaCATTCGCAGTATGCATAGTTAAATATACCAAAATGACGCTTAAAAGGCTTCACATTTCAAACAAGGCATTTCAATATAATCTCAATATTAATCATTTCAatccaaatataaatacaaatttaaatagCTCTCTTATctgtaaacaaattaaacacatattaaacatatattatagactactatacacaaacacacacacacacacacacagaaactctCAACGTTGTAACAAGCTTACAGTGCTTTTACATAAATCAgcatgtttaaagttttaatcatacataaaaga
>TU104642
ccaccaagaaggaccgaccacatccaacaggattaactgtggacactgtaagaggaagctgtctgaaagggatgttcaaaggggtgctaacccagattgaatccaaaaaacataaaaccacggctgatcaaatcacggcagaattcaaataaataaattattttggtctaaaaccacttgtttcagtttcattgtccaacccctgtatatatatatatatatatatatatatta

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0071944 cell periphery cellular_component

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
TU104641 True 3081 lncRNA 0.33 2 1647472 1650592
TU104642 False 234 lncRNA 0.36 2 1609584 1650592

Neighbor

gene id symbol gene type direction distance location
inafm2 inafm2 coding downstream 32241 1574260 ~ 1577343 (-)
LOC103038790 LOC108430634 coding downstream 112241 1481744 ~ 1497343 (-)
LOC107197727 NA coding downstream 143185 1463238 ~ 1466399 (-)
LOC103037189 LOC103037189,LOC108269635,LOC108441826,LOC106588122,LOC106511380,LOC100701192 coding downstream 154994 1448800 ~ 1454590 (-)
LOC103039104 rab15,LOC103039104,LOC108441824,LOC105889812,LOC107671782,LOC107668202,LOC106608154 coding downstream 161849 1443327 ~ 1447735 (-)
pak6 pak6,LOC108269614,LOC108430618,LOC100536197,LOC107663165,LOC108237117 coding upstream 254 1650846 ~ 1681013 (-)
bub1b NA coding upstream 39618 1690210 ~ 1696998 (-)
pld4 pld4 coding upstream 211213 1861805 ~ 1875477 (-)
cep170b NA coding upstream 228678 1879270 ~ 1910962 (-)
akt1 akt1 coding upstream 265440 1916032 ~ 1986853 (-)
G77442 NA non-coding downstream 36038 1573324 ~ 1573546 (-)
G77440 NA non-coding downstream 45627 1560949 ~ 1563957 (-)
G77435 NA non-coding downstream 57885 1543203 ~ 1551699 (-)
LOC103036887 NA non-coding downstream 89629 1516944 ~ 1519955 (-)
G77422 NA non-coding downstream 263068 1345354 ~ 1346516 (-)
G77596 NA non-coding upstream 103092 1753684 ~ 1832249 (-)
G77622 LOC108430640 non-coding upstream 167263 1817855 ~ 1819982 (-)
G77619 NA non-coding upstream 262968 1913560 ~ 1922528 (-)
G77626 NA non-coding upstream 288293 1938885 ~ 1941615 (-)
G77630 NA non-coding upstream 357477 2008069 ~ 2027966 (-)
gpx2 gpx2,LOC102306767,LOC100700650,LOC103363131 other downstream 168283 1438465 ~ 1441301 (-)
LOC103042803 LOC108441829,LOC108269607,LOC103136210 other downstream 178340 1368097 ~ 1431244 (-)
G77362 NA other downstream 335414 1273737 ~ 1274170 (-)
lin52 lin52,LOC107594798 other downstream 883354 708644 ~ 726230 (-)
ivd ivd,LOC107719458 other downstream 1073537 459202 ~ 536047 (-)
LOC103034803 ppp1r14d,LOC105908342,LOC107678771,LOC108269636,LOC101077163 other upstream 63928 1714520 ~ 1764531 (-)
srp14 srp14 other upstream 203052 1853644 ~ 1860409 (-)
LOC111193168 NA other upstream 392367 2042959 ~ 2047241 (-)
gchfr gchfr other upstream 500196 2150788 ~ 2155348 (-)
G77656 NA other upstream 539721 2190313 ~ 2190653 (-)

Expression


Co-expression Network