CI01000009_01550846_01564109 (TMTC4)


Basic Information

Item Value
gene id CI01000009_01550846_01564109
gene name TMTC4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 1550784 ~ 1565168 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_01550846_01564109.mRNA
ATTAACCATCAATCTGATCCTCATCACTTTTAATGTTGCTGACTCCAGTACATTGTATTTGTTCTCATATTGTTTAGTAGCCTCATTCATTCATTCATTCATTCATACTTATGCTTTGAAAAATATGGCTATGTAAACATAATAAATTATTATCATTCATAACTCGTCTAGTGATAATGGAAAATGGCGGCGCCAGGGGGGGAACACCATATACAATAAAGGATCCTTTTATAGTAGACTGATATGAGATTAATATGAAGTCTAGATATATTGTAATGATGTTTCTCAAAAAATGACAAAAAAAAATGTCAACTAAAATTAAGTATACCATATCGCACTGTTACCGCTTAACATTTCATGTCATATAGCCATTTACTGTGAAATATTTTTGATTTGTTTGTATGAGTCCTCGCATTATATTCACTCGGCTGGCTCAGGTCACGTGACGTCAGTCTATTCTTCTCCGCGCGCTAGCAGGAAGTAAAAGCGAGAGAGGCTCATTCAGGGATCAGCCATCGTTTAGCCACGTATCAAGCCTTTATTTTCACATTCGTGTGGTTTTAGAGATATGCGCATTGTATTTATGTGACACCGGTGATTTAAAGCCTGTACTGCTCGTCTCCTACAGATTGCAAATCGTCCTCTTCGGCGGGCAGACAGTTATTGACGTCAGTGCACGTTTATACTTTTAATATTTGTGAATCATGTTTTAACGATCGTCATTCGCGCGTGAGTAGAATATATGTGTAGAAAACATAGAAAGTGTGAATGGTTTAGTATCCTTTGCTCGCCCTGACAGCCGGTAGCTATGCATTGCATGCATCTGTGTGTACAACCATGCAGCATAGCATGCAACTGCGCTGAGATGTCACACTGCCTTTTCTAACAGATCTCTTTAGTGTATACAATGGGTATGTTTCCAGTCTATGCACCCTTCTCGTGAAATGTTTTGATTTTGGAAGTCTTTTTGGAGTGTTAGTTTGCTATTTTAACCTCCCACCTGCTTTCTTTGTTCTGCAAGACAGTGGTGGGTCAGAATGAACAGAGACCACATGAAAGATGGTGCTTTCTGAGCCTTACTGGGATCATCACATCCCCCTGCCAAAACTGGGACCCTTGCACTCCAGGCTGGTCACTGCCTTTGTTGCCCTGATCTGTTTCATAAACAGCTATGATGGGGACTTTGTCTTTGATGATTCAGAAGCCATCATCAATAACAAGGATTTGAATCCTGGCACTCCTCTGAGTAACATCTGGAAAAATGACTTTTGGGGAAGTAACTTAAGTAGCAACTCCAGTCACAAATCCTACCGGCCGCTGACTGTCCTGACCTTCAGGATCAACTACCTCTTGGCCGGTGGATTGCATCCGATCGGCTTCCACATGCTCAACGTTGCCCTCCACTGTGTTATTTCTGTGTTAATGATCGATGTGTTTGCAATATTAATTGGAGGCCTGGTTCACGACGGAAGAGGGGCGAAACTCAATCTCTGTCCGAAAGCTTCCTTCCTGGCTGCGCTCTTCTTTGCTGCACATCCAGTTCACACGGAAAGTGTGGCTGGCATTGTTGGCAGAGCAGATTTGTTGTGTGCCCTCTTTTTTCAGCTCTCTTTTCTGGTTTACTGCAGAGCGTTTCAAGGTGGTGATCGAAAGTTCTCTGTGTTGTGGATATTTGGCAGCATTCTTCTTTGTGCTGTAGCCATGCTGTGCAAGGAGCAAGGCATTACAGTTTTGGGAGTGAATGCTGCTTATGATATTCTCATGGTCTGTAATCTGAACATCTTTGAGCTAGCTCAGCGCTTGCTGTCCAGGAGAAAATCAGCTGATATTGGTGGGTTAGTGCGGAGCGGTTTGCTTATGAGGTTGGCTCTTCTCTTTCTTGGTGGTTCCTTTCTTTTGTATGCAAGATGGAGGATCATGGGAACTGGGCCTCCATCTTTCACTGAGGTGGATAACCCAGCATCCTTTGCTGAAAATGTTATTCTGAGGATTGTGAACTATAATTACTACTACTCCTTGAATGCCTGGCTGCTGCTGTGTCCCTGGTGGTTGTGTTTTGATTGGTCAATGGGCTGTGTGCCTCTGATTAAATCAGCCACTGATTGGAGGATTGTCTGGCCTCTTGTGCTGTGGTGCTGTCTGATGGGCTTGGTAAGCCAAGCTCTGTGCTCACAGGACAGCCATAAAAGAAGGACTCTGACGTTTGGCTTGGTCCTGCTGGTGATTCCATTCTTGCCAGCCAGTAATCTGTTTTTCAGGGTAGGATTTGTGATAGCCGAGCGGGTGCTGTACCTCTCCTCAGCGGGCTACTGCCTCATTCTTGCCTACGCTGTGGGCTACTGTAGCTGCCACTGGAGGAAACACAAGAGGCTGCTGAGAGTGGCCACGTTGACGCTGCTGTGTGTGAACGTGGCTCGCTCTGCACAGCGCAGTCAGCAGTGGAGGTCTGAACAGAGTCTCTTCACCAGCGCCCTGTCTGTCTGCCCACTCAACGCCAAGGTGCATTATAATGTTGGCAAAAGCCTTGCTGACAGAGGCAACCAGAGTGCTGCTGTCAACTACTACAGGGAGGCAGTGAGATTACACCCCAAGTATGTTCATGCTATGAACAATCTTGGCAATATATTAAAGGAAAGAAACGAGTTAAGGGAAGCCGAAGAGCTCCTGTCGGCTGCGGTTCATATCCAGCCTGATTTTGCTGCAGCTTGGATGAATTTGGGTATTGTGCAGAACAGTCTGAAAAAGTTCGACAAGGCAGAACAGAGCTATTGGAACGCCATTCGATTCAGGAAAAAGTATCCAGACTGTTATTACAATTTGGGACGTCTGTATGCAGACCTGAACCGCAGCATCGACGCGCTAAACGCCTGGAGGAACGCCACCATGCTGAAGCCTGACCACAGCCTGGCGTGGAACAACATGGTCATACTGTTGGACAACACTGGTAAGGTGGAGTTGGAAACTGATCATATATTGAGTAAAGGCAATCTGGCTCAGGCTGAGCTGATTGGAAAGGAAGCATTAAAGATATTGCCAAAAGATCACACCATCATGTTCTCCCTCGCCAATGTCCTTGGGAAACAGGAAAAATACAAGGAGTCGGAAGGATTCTTTCTTAACGCTCTGAAGATCAACCCAAACGTTGCCAGTTGCCATGGCAATCTTGCTGTTCTTTATCACCGTTGGGGAAAACTAGACTTAGCAAAGCGGCACTATGAACTGTCTCTTCGTCTGGATCCCAGCGCTCCAGGGACCAAGGAAAACTACAACATGCTGAAACGCAAACTAGAACAACGGCAAAGGACTGTTGGATAATACTGTTTTTGATAACTGCATGCCATAGAAGTCTTTGTACGGTCTCTACATAACTAAATAAA

Function

symbol description
tmtc4 Predicted to enable dolichyl-phosphate-mannose-protein mannosyltransferase activity. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Is expressed in central nervous system; neural plate; and retinal ganglion cell layer. Orthologous to human TMTC4 (transmembrane O-mannosyltransferase targeting cadherins 4).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_01550846_01564109.mRNA True 3377 mRNA 0.45 17 1550784 1565168

Neighbor

gene id symbol gene type direction distance location
CI01000009_01541031_01546978 NA coding downstream 2980 1540894 ~ 1547804 (-)
CI01000009_01423940_01424233 NA coding downstream 126211 1423711 ~ 1424573 (-)
CI01000009_01394603_01397604 ZIC5 coding downstream 152311 1394558 ~ 1398473 (-)
CI01000009_01386589_01389680 NA coding downstream 160635 1383864 ~ 1390149 (-)
CI01000009_01327537_01337349 NA coding downstream 212938 1327312 ~ 1337846 (-)
CI01000009_01596212_01681960 NALCN coding upstream 30533 1595701 ~ 1682027 (-)
CI01000009_01743393_01795392 FGF14 coding upstream 177950 1743118 ~ 1795461 (-)
CI01000009_01925054_01944771 ANKRD44 coding upstream 359767 1924935 ~ 1944771 (-)
CI01000009_01954952_01964842 SF3B1.S, SF3B1 coding upstream 389391 1954559 ~ 1965237 (-)
CI01000009_01981245_01988092 HSPD1 coding upstream 415528 1980696 ~ 1988092 (-)
G52157 NA non-coding downstream 99858 1446494 ~ 1450926 (-)
G52160 NA non-coding downstream 119219 1426074 ~ 1431565 (-)
G52102 NA non-coding downstream 235304 1305269 ~ 1315480 (-)
G52096 NA non-coding downstream 266877 1283543 ~ 1283907 (-)
G52244 NA non-coding upstream 123904 1689072 ~ 1703392 (-)
G52267 NA non-coding upstream 327811 1892979 ~ 1893288 (-)
G52274 NA non-coding upstream 409034 1974202 ~ 1975828 (-)
G52222 NA non-coding upstream 425453 1990621 ~ 1991986 (-)
G52230 NA non-coding upstream 529200 2094368 ~ 2096052 (-)
G52098 NA other downstream 143157 1401932 ~ 1407627 (-)
G52410 NA other upstream 986556 2551724 ~ 2562533 (-)
CI01000009_02885473_02893975 NA other upstream 1318520 2883688 ~ 2893975 (-)
CI01000009_03261739_03262843 NA other upstream 1696035 3261038 ~ 3262843 (-)
G52828 NA other upstream 2652252 4217420 ~ 4231469 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00014671 tmtc4,LOC107600375 coding CM030128.1 CM030128.1 26346500 ~ 26360991 (-)