G52160


Basic Information

Item Value
gene id G52160
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 1426074 ~ 1431565 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU59425
GCTGCAGACAACAGGTGTCTCCATTAGGGTTGTGCACCATTCAGTATTAAATTGAGAATGCCGTTTAAAGTCAATCATTGAATTTGAATTGAGGTAGCAAATAGGGTGTAGAATTGCAATTTGAATTTCAATATAAGACAGTAGAAATAATAAATTGAAATGTAACAGATTTCATATAACTGTATTTTTAAAACAAATATGGTAAATAGATAGACAGATAGATAGATAGATAGATAGATATTGAACAAGTCTAGACTTCATACAAGTGGAAACATATCTTCAGTTTGATTAGATAAGCTTCAAAGCACACTTACACTTGACAGAACAATCTAAAGTATGCATTAACCATAGAAGACACATGGATGCTCATGCTACTATGAATTAAATATAAAGACATAAACATATAAGTGTATCAGACTCAATATCATGGTATTTTGTGGCAGACAAACTCTGGCAGTCGTTACTGCTAGGCCTTTGGGAAAATTCCTTTCATTATATGAATAACTTTTTAAGCCGGTGACTTTCCATACTGAAATACTTTCCATTGTACTAACAGTTTGACAACTTCACTTTCAAAAGCTGTGCTTGCCTCATTTTGTACAACGTTTGCCACAATGCTAATTTCATACTTGTTGAACTGGGAAGCAAAAACAGAGCAAACTAAGGTCACTTGGCGTTAAGACCCTGGCTATTCTAACATTTATGTCATTTTATGCTCCAAAAAAATGTTATTTGATCCAAAGGAGCGAGTGCTTGGCTTCAGGGACCTAATATCTTCATAAATGCCATGTAAATGCCTTCATGGGCTAATAAGATCACTATTTCTAAATTAAGAACATCTTTTATTTTTTCTAAATGCTTGTCTGATGAGGGAGATATAAGATGTAGCCTATATAATATTTTCCCCCAAACAATAAAGAATAAAAAAAATGTTGTGTGTTTTTTGTCGTCTGTTTTGAATCAGATTCAGAACTAACGATGTCCGATTCGCGAACGAATCACTCTTTTGAGTCGAATTAGGAATAGCATAACGATCTGAATCGGTTCGCGATTCAGTCTGAATAATTCATACAGTGACGTACTAAAATCTTTGGAGTGGTTTCTCACTTCGAAGTAGCGTGATACTTTTGGACACAGAGGACAAAGAGATACCAGGATGAACTGAATATTTACCTACAATTATTTACCTATATTTAGTTAAAATAAACCTACAAAAGCATCCTGTCGTGAGCGTCGAAGAAGCTTCGATACTTACACGTGCAGCTTGTTAACGCCCCTGTGCTGCAGGTACATAGCATACATTTTCCGACCAAAGAGTATAAAAACACAGTAGGCCTACACCAAAACATTAAACGTAGCCTACCATTACCGTGTTTAGGAGTGCCTGAACTCTTCATGCTAAGTTGTAACTTATGTTTATTTTATTATAGTTATGCCTGTTCATGAATTCCACAGCATGCACGCCACTTTGCTTACTTTCCTAGGTCTAGGATTATATGGATTTTATTAGTTGATTGGTAATCACATTACAGCACATTTTATTAAATTATTAATATTATTATTGTTCTGGGGGCGCCTTTCATTGGTTAAAATATAAGATATTTAGAGTTGTGAGTTTCCTATTGCTCCCAAATATACTTTTACATTTTCATCTCACCACAAATGTGAATTTTTGGGTGGAATGCTCATTGTTTGATCTCTGCATGTAGATTCCAGGGATAGCCTATCCAGAATAATCCATGAGGTCTTGTGCATATATAGGATTTTCCAAGTTTTGTAGTCAGATGATTTTTTTTAGCCCAATGGTTGATTGATATGTGAATGTGAGCAAGTGGTCCTTCACTGTCTGTGATGTTTTCTATATTAAAGTCAGCATGAAATTGTAGTTGCGAAGGTCTTTTCTTCACTATTGTGAAGTATATATCAAAGTGAAACTACTTTTTAAACAAGAAAAAATGTAGGGCCGGCCTCAGGACTTGATTTTGTCCATCAGGAATTGATTGGATTGTTGTCAATCATTTGGACTGTTGTGATTTGCTATTGCTGTAAACTGACGAGTGACCGTTTGTGCTGCTCTCGCGCCGATAAACACGTCATCAGAGAAGAGATGTCATTGCAAAAGGGAGGGGAAGACATTTTTATTTCATGATTATTTTAATAGGAATATACAGGCTTGAGTGTTCAGATTACAATTGTTTTGGACCTCATTTACACCTTTATTTAGAGCTGACCACTTGAGATTGGATCTCCCAAGATCGATGATAATACAAGATATAAATGGGCCTAAACCGCTAGTAAGTTCCCAGCCTGTTAGCCAACAATTGAAGGCAAACATTGTGCAGCTTTGTGCTGTGCACTCCATTAGGAAAAGATTTGTCTCTTGTTTAGCAAGGACGTGACCTTGTATTTGAGTAGGGCTATTTTCATTGCAATTGTCTTATGATTGGCGTTACCAGTCAAGCCATTGACTTCATTAGCACAAGAATTGATGAGTCGTTTTCATTTTGTAAGTGCATTTTTTAGTCGGGCTGTACTTGTCTCTGTCACTTTACAGAACTGCCCTCAAAAAAAGATGCTTATGCAGTTTATTGGGTATGGCCACAGCTAAATGTTAAACAGAATGACTCATGGGAAAGCATACAAATACAGCCTCTGCTCCTTTGCTATTCCACATCTGCAGGTCATCGGAAGAAAGAAGCACCGGTGAGCTCTTAGATAAAAGATAAAGATGACAGAGCTCTTTAGTGCCCTGTTAAAAAAGAAAAGAGAACAAGACGCCACTCATCCTCACCAGGCCAGCTTCATTTGCTTAATGGCACACAGCTTGAGTTGGGCCAGCTCCCCTAATAATGATCTAACAGTGCAACAAGGCGAGAACTAAGATATGGAAATATTGAAATTCATATAGGCAGGCTGAAAGCATCTCAGCATTGATCAAGCCTCAGCATGGGTAAAAAGCAGCGCTCCTTTAATCAGGGCAGGCCAGGAGCCTTTGGCTACACAGAGGTCCCTCTCAAGATAAGCCTGTCCTACAGCACAGCTAGCTGAGATGAGGGAGAGAGAGAGTGAAGCCTGGGGGCCTGAGCAGAGAGGAGAACCAGGACTGAATCTCAAATCAACTCATTATTCCCTACCTGCTGCACCTTTGTCGTGCATGGAGAGTGCTTCTGTATTCAAACACCACTGCAGCAGCAGAGTTACTTTTTTTTTTCTTTTTTTCAAACAAGGGACCCAGTTTCATGTTGCTTTTGTTTTGGGTCAAAGGCATGACACTAATATTCTTTTTTTTTTTTTTCTTCTTCTTCTTTTTTTCTCTATTCATTTATTAAAAATGCATTTTCCATGCATACAATGACTTGAATACACTTCTTCTTTGATGAACACTTTTTGGTGTTTTTGGTGGGCATAGTCAACATGTCAGGGTTATACAACTGTCCTGATATAATAATGAAAAAAAAAAAACTTATTAAAAGGTTCTGGTTGTAAAGTGTCATGTTGTGTGACTCGCCAATAACTTGAAGGAAGAAAATTATATTTATAAATTAATGATATACATTTTAAAATTTACATTACACATTTTACATTTTCTTAAAATAATGATTAAAATGAAGTACTTTTTAAATAGTCATTAAGTTTTTTTTTCTTAACTTATGAAAATTAAATGTTTTTCAAAACCAACATGTATACAAAGAGTACATGTTTTAAACCTTTTTTTTTTTTTTTTTCATTTTAAAAGATTTTTCATTTTGTGAGTTGTTTCCACCACGGAATAAAACAATTTAAAAGATAATGGCAGAATCTCACAATTCTGACTTTTGTTCCTGCAATTGCCAGTTTACATCTCACAATTCTGACTTTTTCTTATCAGAATTTTGAGATATAAACTCACAATTGTGAGTTATAATATCAGAATTAAACTCACAATTGTGAGTTATAAAGTCAGGATTGTGGGATATAAACTAGCAAAAGGGAGAAATAAAGGCAGAATTGTGAGATATAAACTCTCAATTCAGACTTTATATCTCACAATTCTGACTTTATAACTCGCAATTGCGAGTTTATATCACACAGTTCTGAGAAAAAAAAGTCAGAATTGCCAGATTAAAACTCGCAATTGCGAGAAAAAAAAGTCAAAATTGTGAGGAAAAAGACAAAATACATTGACCCTTTTGCCCTTTTGACCAATTTTTTGTTAGTTTGGACTAATTGTTCTTTCTTATATCCTTATGACCCTTCCTATTTCTTTTTTTCCCCCTCTGCATTTGTACAAATGAAGTTTTCACCATGGCAATCACACCTTTAATTAAATTAAAACAAAAGGTGCTAAGGCTGTTGATTGTTAAGGCAGAGGACGAAGGAGGGGAGAAGAGGGTTGCAGAAAGCAATGAATATCAATGTGTGATGAATGACTGGGCTCCCCCAGCTGTCATCTAAATGAACGTGAATATTCAACTCTTTCCCCTCCACTTAGCTTCCATTTAGCTCTGATGACATTTCATTAGCTTGTCCCATGGTGCTGCGAAACGATAAGTGATCCGCGGAAAGCTGTTTCGCCTTCATGTTTATTCTCAAACAATACTTACTCTGTACTGCCATGCGTTTCCTTTTCTTTCTCAGTTTTGGCGTACGTCCTTACAACCAGCATGGATCAAAGTGTGTGTCATTTTGCTGAGTGTTTTAATTTGTATTGAATTGATTAGCAGAACAGGCCTGTCCCTCTGGGACAGAGGGTTTTGCGTTCCCTCATTGCAACAATACATTGTAATATGTGAAATATTCTGGCATCCATTCTGGAGATTTTTAGCCAAGTTTTAATTGAAACTTATTGAAATCCTACAAATCCGTGCAGTGCTAGAAAACATTGTTGGACTAACGTCAGGGCTTCAGACTGTGACAAAAATCACAGCTCCCTTGTGAGATAGAGCCACACGTAACTTAGTTCAAGTTCACTTGTGCATTTGCGTCATTTTGTGCATATAATTTGTAATATTATGTTTATTTTGTATATATCTGATTAATCTCATATAGGATGTGATTTGTAGAGTTAAATAACCCGCTAGCAAAGTGCTTCAGTTTACCGGTGTTCATTCAGTGCTTCAGCGCATGCAACTCAAACAGCAATGCACAACTAATAATAACTATGATTGGGACTGTCATGACTAATGGGAACACTATTGTAAAAAAAATTTGTGAATTCGTTGGGTTTAGTTGCAGTGTTTTAGTGCGTTGCTCCAGGAAGAGCACATCTGCAACAGGAATTCTGACTAGCACGCATCTGAAGCGGCGTTGGTGACCCTTCTCATTTATTTGGTGGGGAACATGGCGTTTTGAGCAGCATTTGCGCACCCTGTTATGCTGTTGACCACTGCACATATTGCAGTATTAAGGCTAACAATTAATCGTTTACTTTATCGTTAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU59425 True 5419 lncRNA 0.46 2 1426074 1431565

Neighbor

gene id symbol gene type direction distance location
CI01000009_01423940_01424233 NA coding downstream 1501 1423711 ~ 1424573 (-)
CI01000009_01394603_01397604 ZIC5 coding downstream 27601 1394558 ~ 1398473 (-)
CI01000009_01386589_01389680 NA coding downstream 35925 1383864 ~ 1390149 (-)
CI01000009_01327537_01337349 NA coding downstream 88228 1327312 ~ 1337846 (-)
CI01000009_01293719_01294750 NA coding downstream 131111 1292716 ~ 1294963 (-)
CI01000009_01541031_01546978 NA coding upstream 109329 1540894 ~ 1547804 (-)
CI01000009_01550846_01564109 TMTC4 coding upstream 119219 1550784 ~ 1565168 (-)
CI01000009_01596212_01681960 NALCN coding upstream 164136 1595701 ~ 1682027 (-)
CI01000009_01743393_01795392 FGF14 coding upstream 311553 1743118 ~ 1795461 (-)
CI01000009_01925054_01944771 ANKRD44 coding upstream 493370 1924935 ~ 1944771 (-)
G52102 NA non-coding downstream 110594 1305269 ~ 1315480 (-)
G52096 NA non-coding downstream 142167 1283543 ~ 1283907 (-)
G51951 NA non-coding downstream 156049 1267951 ~ 1270025 (-)
G52094 NA non-coding downstream 159462 1266178 ~ 1266612 (-)
G52157 NA non-coding upstream 14929 1446494 ~ 1450926 (-)
G52244 NA non-coding upstream 257507 1689072 ~ 1703392 (-)
G52267 NA non-coding upstream 461414 1892979 ~ 1893288 (-)
G52274 NA non-coding upstream 542637 1974202 ~ 1975828 (-)
G52222 NA non-coding upstream 559056 1990621 ~ 1991986 (-)
G52098 NA other downstream 18447 1401932 ~ 1407627 (-)
G52410 NA other upstream 1120159 2551724 ~ 2562533 (-)
CI01000009_02885473_02893975 NA other upstream 1452123 2883688 ~ 2893975 (-)
CI01000009_03261739_03262843 NA other upstream 1829638 3261038 ~ 3262843 (-)
G52828 NA other upstream 2785855 4217420 ~ 4231469 (-)

Expression


Co-expression Network