CI01000009_02247894_02249252


Basic Information

Item Value
gene id CI01000009_02247894_02249252
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 2247774 ~ 2249286 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_02247894_02249252.mRNA
ATGTTCCATTCCTGTATCAGCAAATTCGTACATCATGCTGCTCAGTGTCTGTCTCCTGCTGTCTGTCTTCTCTCTGTCCGGAGGGTTAGAGAGTGGTATTGTAGGAGGCATAGAGGTTAAACCTCATTCCAGACCATACATGGCATCTCTCCAGTATAGAAGACAACATATGTGTGGAGGGATGCTGATTAAGGATGATTATGTGCTGACATCAGCCCACTGTTGGAATAAGACCCCCGACTACTTATTAGAAGTTGTTCTGGGAGCTCACAATATCAGCCAGAATGAGCACAGCCAGCAGATAATCAAAGTAGAGGAGTACATCCCACATCCCAGTTATACAAACAAAAACTTCACCTACGATATTATGTTACTAAAGTTGAAGACTAAAGCTGTGCGGAATGAGTTTGTGGATGTTATTGATCTACCTAAGAACAATGAAAATATTCCCGCCCATGTGGAATGCTTCATTGCTGGCTGGGGTATGACAAAACCCGGAGGAAAAGCATCAAGTGTTCTGCGGGAAGTCAGCGTCAAGTTGCAGTTCAGCTTTGAATGTAAAAAAAAGTGGCAGGAATATTTCAACTCTGAGAAAATGATCTGTAGTGTCTCAGATGGGAAAAAGGCTTTCTGTCAGGGTGATTCTGGCAGTCCTCTTTTTTGCGACTCTAACCTTCAAGGAATGGCTGCATACACATATCATTCTGACTGTACATCCAAAAAGTATCCTGAGGTCTACATGAAAATATCTGCCTTCCTTCCATGGATTAGGAAGCACATTAAGTGATTGAAACATCATCAAACATTTATGCACCTAAATCATGTGAATAATTAGGAACCTTAATTTTTCGCTACTCCCTGCTGCCATTTCCAGTTTTTGAACTTCATAAAAATGGTCAAGAATAAA

Function

NR:

description
novel protein containing trypsin domains, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_02247894_02249252.mRNA True 907 mRNA 0.41 5 2247774 2249286

Neighbor

gene id symbol gene type direction distance location
CI01000009_02239426_02240738 NA coding downstream 6978 2239421 ~ 2240796 (-)
CI01000009_02237301_02238365 NA coding downstream 8902 2237301 ~ 2238872 (-)
CI01000009_02228671_02232977 DNAJB11.S, DNAJB11 coding downstream 14797 2227624 ~ 2232977 (-)
CI01000009_02167959_02200058 SATB2 coding downstream 47716 2167363 ~ 2200058 (-)
CI01000009_02001400_02018841 RFTN2 coding downstream 227133 2000456 ~ 2020641 (-)
CI01000009_02251416_02262823 ERCC1 coding upstream 1875 2251161 ~ 2262823 (-)
CI01000009_02286191_02288884 OLIG1 coding upstream 36874 2286160 ~ 2288981 (-)
CI01000009_02300395_02301213 OLIG2 coding upstream 50823 2300109 ~ 2301637 (-)
CI01000009_02327693_02335035 NA coding upstream 78407 2327693 ~ 2335035 (-)
CI01000009_02352214_02356619 NA coding upstream 102928 2352214 ~ 2356841 (-)
G52342 NA non-coding downstream 32239 2214952 ~ 2215535 (-)
G52338 NA non-coding downstream 90028 2157412 ~ 2157746 (-)
G52230 NA non-coding downstream 151722 2094368 ~ 2096052 (-)
G52222 NA non-coding downstream 255788 1990621 ~ 1991986 (-)
G52274 NA non-coding downstream 271946 1974202 ~ 1975828 (-)
G52371 NA non-coding upstream 139028 2388314 ~ 2388539 (-)
G52328 NA non-coding upstream 150528 2399814 ~ 2400894 (-)
G52330 NA non-coding upstream 151749 2401035 ~ 2401380 (-)
G52378 NA non-coding upstream 177963 2427249 ~ 2427848 (-)
G52379 NA non-coding upstream 199080 2448366 ~ 2451640 (-)
G52098 NA other downstream 840147 1401932 ~ 1407627 (-)
G52410 NA other upstream 302438 2551724 ~ 2562533 (-)
CI01000009_02885473_02893975 NA other upstream 634402 2883688 ~ 2893975 (-)
CI01000009_03261739_03262843 NA other upstream 1011917 3261038 ~ 3262843 (-)
G52828 NA other upstream 1968134 4217420 ~ 4231469 (-)
G53515 NA other upstream 3253109 5502395 ~ 5505248 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037953 gzm3.4 coding NC_007120.7 CM002893.2 32670526 ~ 32672129 (-)