CI01000009_03006152_03007243


Basic Information

Item Value
gene id CI01000009_03006152_03007243
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 3005386 ~ 3007855 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_03006152_03007243.mRNA
ACTGTCCCACGGTCTAGTTAGACTGCTTAAAGAGGGCTGAACGTTGACAGCGAGCAGGGAAAAAGCATTGGAATTCAGGTTAGGAATGAACTCCCTAATGGAGAAAAATTAGAGTCAAGTGACCATCAGCTGGTCGAAGTATGTTTGATCAATACAGTCACAAGGTCTCAGGTATGCAGAGCTGGAGCCTTTACAGGAGGGTGCAAAGACAGCCATACAGCATATCATCTCTGTGTGCTCCTGTCAGTCAAACAGAGAATGATTATGCTTTATTGTTAACCAATACAATAAACTCATACATAAATTGCCTGGCGCTCTCAGCATCCTTGTCAACAGGACATATTCAGCACTATGTGAGTCACTCTCTTTTGTTTATCTAGCTGAGGATGATTTAATTAGATGACGACCCAATCAAAGTGCACCTTGGGCAGCTAACAAGCACCCACTTCTAATTAATAAGACTTGAATTGAGTGCTCTGACTGAGGCGGACTTATGCTTGCCAAACCACTTAGTGGATTCGGGGAGTAGTTGCAAAACCAGGCTTACATTTTCATAATATTAACAGGTCAGACAAAGGTTTATGTCTCTGTTTGTGATGAGAAAAATGCACAATGCAGGTCTGGTTCAGTTACAATGGTGTGATGAGCACCTTTAAAACATACCGGAGCCATGGCCTCTATCTGTCTGCCTGCCTGCCGTCTTGCCGCCAGGCTAATGGGGAAAGAATGAGAAATATTTGTGAGAGTGCTAACGCTATGCTCATGGCCGGATTTACCGCATATTGTGACATAGGCGCTGAGGATGGCTCGAGTGGACGACCGCTGCCGGTGACTTTTTAGGGTGCTCATGAGGTGCTCAGTAGTCAGTGTAGATCCTGTGTTGCAATCAGCAGCTACATCTGGCTACTGGGTCTCTGATGGCATTTTCTGCTTCCTGTTGGCACATTCCTTTCAGATTGTGTGGTATGTTATCACAATGTGTGCTTCATCCTGTCAGAATAGGACTCACTCTTTCATGGATGTTAAAGAGGGCCCTTGTCATAACAGTCTGTCTCTTTGACCAGACCGATTCTGCGCTGTTTTTGCACTTTTAGCCTAGTTCATTGTGGGGGTTTTTCCCCTAAAACAATTTGATCAAGGTGAGTTAACTCTCACAGCATAGCTAAAAGCCTCGAGAAACCATTTCAGATGTCTTTGAACGGAAGGAATGAGACATTGTTTCTTGTTTGACTGCTGAAGATTCGGTTTAAGTGATTAGGTAACAAAGGACAAGGCGACATGTCACATTCCCTTTGTGTTTTGCCTGTCACAAGGGGCTGTCTTTGTGAAAATGTTTTTGAGTTGCTGAAGGCTGACAAATAATGAGAGTTAAATGCGCAGACATGCTGAATCGCATCAGATTTGGAAAGCGAAGGATGAATTCTTTTGTGCTGTCATGAACCTGGCATACAATGTAGATTTCTGTGTGGTACAATCTACAGCTACATTGTCTGCTGGGTTTCAGGCCAGTAGAAAATTCTGCTCTGCTCAGAAATTGAATAGGTGAGTCTTTTAGTCATTATGCATGTTTGAAAAAGACATATTCCTACTTTGAGAATGAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_03006152_03007243.mRNA False 1606 mRNA 0.43 2 3005386 3007855

Neighbor

gene id symbol gene type direction distance location
CI01000009_02975388_02982670 NA coding downstream 19995 2975388 ~ 2985391 (-)
CI01000009_02916137_02917550 FUNDC1 coding downstream 87836 2915641 ~ 2917550 (-)
CI01000009_02904768_02914992 EFHC2 coding downstream 90139 2904691 ~ 2915247 (-)
CI01000009_02885473_02893975 NA coding downstream 111411 2883688 ~ 2893975 (-)
CI01000009_02844171_02861309 MAOB coding downstream 144077 2843011 ~ 2861309 (-)
CI01000009_03009238_03025860 NA coding upstream 505 3008360 ~ 3025937 (-)
CI01000009_03140599_03143635 SLC35A5 coding upstream 132744 3140599 ~ 3143635 (-)
CI01000009_03171440_03194494 DCAF6 coding upstream 163585 3171440 ~ 3195145 (-)
CI01000009_03226613_03234223 ME3.L, ME3 coding upstream 217913 3225768 ~ 3234223 (-)
CI01000009_03235111_03242103 NA coding upstream 227159 3235014 ~ 3242103 (-)
G52553 NA non-coding downstream 9481 2995649 ~ 2995905 (-)
G52489 NA non-coding downstream 92041 2913118 ~ 2913345 (-)
G52488 NA non-coding downstream 92844 2912305 ~ 2912542 (-)
G52478 NA non-coding downstream 181458 2822962 ~ 2823928 (-)
G52556 NA non-coding upstream 38034 3045889 ~ 3046097 (-)
G52557 NA non-coding upstream 41243 3049098 ~ 3049653 (-)
G52566 NA non-coding upstream 63306 3071161 ~ 3071388 (-)
G52518 NA non-coding upstream 74136 3081991 ~ 3082437 (-)
G52589 NA non-coding upstream 140073 3147928 ~ 3149432 (-)
G52410 NA other downstream 442853 2551724 ~ 2562533 (-)
G52098 NA other downstream 1597759 1401932 ~ 1407627 (-)
CI01000009_03261739_03262843 NA other upstream 253348 3261038 ~ 3262843 (-)
G52828 NA other upstream 1209565 4217420 ~ 4231469 (-)
G53515 NA other upstream 2494540 5502395 ~ 5505248 (-)
G55814 NA other upstream 5417966 8425821 ~ 8428012 (-)
CI01000009_08858198_08860555 NA other upstream 5850297 8856310 ~ 8860563 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G150576 NA non-coding NC_048566.1 CM023220.2 47365665 ~ 47366117 (+)
rainbow trout (Oncorhynchus mykiss) G1772992 NA non-coding NC_048586.1 CM023240.2 9877812 ~ 9878249 (+)